Hb_002085_100

Information

Type -
Description -
Location Contig2085: 162853-165444
Sequence    

Annotation

kegg
ID rcu:RCOM_1401140
description Syntaxin-72, putative
nr
ID XP_012064852.1
description PREDICTED: syntaxin-72 isoform X1 [Jatropha curcas]
swissprot
ID Q94KK6
description Syntaxin-72 OS=Arabidopsis thaliana GN=SYP72 PE=2 SV=1
trembl
ID B9SK57
description Syntaxin-72, putative OS=Ricinus communis GN=RCOM_1401140 PE=4 SV=1
Gene Ontology
ID GO:0006810
description syntaxin of plants 71 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002085_100 0.0 - - PREDICTED: syntaxin-72 isoform X1 [Jatropha curcas]
2 Hb_002681_080 0.2071793427 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
3 Hb_022213_030 0.2246950885 - - PREDICTED: uncharacterized protein LOC105114631 [Populus euphratica]
4 Hb_008511_140 0.2291249042 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632314 [Jatropha curcas]
5 Hb_000495_080 0.229848003 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
6 Hb_000529_140 0.2305141746 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000656_330 0.2316546821 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
8 Hb_007002_010 0.2354911619 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
9 Hb_017098_010 0.23549837 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_000390_030 0.2368786591 - - hypothetical protein ZEAMMB73_364791 [Zea mays]
11 Hb_000599_230 0.2387611067 - - -
12 Hb_002518_110 0.2397051494 - - 1-amino-cyclopropane-1-carboxylic acid oxidase [Manihot esculenta]
13 Hb_005523_010 0.2431012266 transcription factor TF Family: PHD PREDICTED: helicase protein MOM1-like [Jatropha curcas]
14 Hb_000352_220 0.2435208087 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
15 Hb_001080_150 0.243846649 - - PREDICTED: Niemann-Pick C1 protein-like [Jatropha curcas]
16 Hb_012463_010 0.2443706177 - - PREDICTED: uncharacterized protein LOC104901296 [Beta vulgaris subsp. vulgaris]
17 Hb_009252_010 0.2447394088 - - PREDICTED: kinesin light chain [Jatropha curcas]
18 Hb_008092_080 0.2456115548 - - elongation factor ts, putative [Ricinus communis]
19 Hb_007933_030 0.2478194752 - - PREDICTED: uncharacterized protein LOC105639932 [Jatropha curcas]
20 Hb_011616_020 0.2479179494 - - hypothetical protein CICLE_v10004968mg [Citrus clementina]

Gene co-expression network

sample Hb_002085_100 Hb_002085_100 Hb_002681_080 Hb_002681_080 Hb_002085_100--Hb_002681_080 Hb_022213_030 Hb_022213_030 Hb_002085_100--Hb_022213_030 Hb_008511_140 Hb_008511_140 Hb_002085_100--Hb_008511_140 Hb_000495_080 Hb_000495_080 Hb_002085_100--Hb_000495_080 Hb_000529_140 Hb_000529_140 Hb_002085_100--Hb_000529_140 Hb_000656_330 Hb_000656_330 Hb_002085_100--Hb_000656_330 Hb_000521_090 Hb_000521_090 Hb_002681_080--Hb_000521_090 Hb_010757_030 Hb_010757_030 Hb_002681_080--Hb_010757_030 Hb_007002_010 Hb_007002_010 Hb_002681_080--Hb_007002_010 Hb_000599_230 Hb_000599_230 Hb_002681_080--Hb_000599_230 Hb_003077_130 Hb_003077_130 Hb_002681_080--Hb_003077_130 Hb_000352_220 Hb_000352_220 Hb_002681_080--Hb_000352_220 Hb_000370_040 Hb_000370_040 Hb_022213_030--Hb_000370_040 Hb_001516_050 Hb_001516_050 Hb_022213_030--Hb_001516_050 Hb_001942_020 Hb_001942_020 Hb_022213_030--Hb_001942_020 Hb_001080_150 Hb_001080_150 Hb_022213_030--Hb_001080_150 Hb_177343_010 Hb_177343_010 Hb_022213_030--Hb_177343_010 Hb_000270_710 Hb_000270_710 Hb_022213_030--Hb_000270_710 Hb_052946_010 Hb_052946_010 Hb_008511_140--Hb_052946_010 Hb_008511_140--Hb_000529_140 Hb_008511_140--Hb_000495_080 Hb_030131_030 Hb_030131_030 Hb_008511_140--Hb_030131_030 Hb_001080_030 Hb_001080_030 Hb_008511_140--Hb_001080_030 Hb_000676_200 Hb_000676_200 Hb_008511_140--Hb_000676_200 Hb_000495_080--Hb_000352_220 Hb_003226_190 Hb_003226_190 Hb_000495_080--Hb_003226_190 Hb_000189_250 Hb_000189_250 Hb_000495_080--Hb_000189_250 Hb_000495_080--Hb_007002_010 Hb_000640_260 Hb_000640_260 Hb_000495_080--Hb_000640_260 Hb_000390_030 Hb_000390_030 Hb_000529_140--Hb_000390_030 Hb_005523_010 Hb_005523_010 Hb_000529_140--Hb_005523_010 Hb_000529_140--Hb_010757_030 Hb_000529_140--Hb_000495_080 Hb_000529_140--Hb_000640_260 Hb_000381_010 Hb_000381_010 Hb_000656_330--Hb_000381_010 Hb_009252_010 Hb_009252_010 Hb_000656_330--Hb_009252_010 Hb_021495_020 Hb_021495_020 Hb_000656_330--Hb_021495_020 Hb_015978_110 Hb_015978_110 Hb_000656_330--Hb_015978_110 Hb_009674_050 Hb_009674_050 Hb_000656_330--Hb_009674_050 Hb_005348_110 Hb_005348_110 Hb_000656_330--Hb_005348_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.160735 0.0790103 0.0341841 0.324735 0.0425278 0.198623
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0770678 0.135178 0.189412 0.897666

CAGE analysis