Hb_002085_110

Information

Type -
Description -
Location Contig2085: 169910-170233
Sequence    

Annotation

kegg
ID rcu:RCOM_1401130
description Protein transport protein Sec61 subunit beta, putative
nr
ID XP_002526375.1
description Protein transport protein Sec61 subunit beta, putative [Ricinus communis]
swissprot
ID P38389
description Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana GN=At2g45070 PE=1 SV=1
trembl
ID B9SK56
description Protein transport protein Sec61 subunit beta, putative OS=Ricinus communis GN=RCOM_1401130 PE=4 SV=1
Gene Ontology
ID GO:0005784
description protein transport protein sec61 subunit beta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21606: 169450-170297
cDNA
(Sanger)
(ID:Location)		 029_L17.ab1: 169526-170281 , 039_P12.ab1: 169694-170271 , 050_J07.ab1: 169630-170297

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002085_110 0.0 - - Protein transport protein Sec61 subunit beta, putative [Ricinus communis]
2 Hb_126643_020 0.0739110214 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
3 Hb_002685_010 0.0827936255 - - PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
4 Hb_002150_080 0.0876509528 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
5 Hb_001277_270 0.0935621995 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
6 Hb_002685_170 0.096381578 - - hypothetical protein EUTSA_v10019281mg [Eutrema salsugineum]
7 Hb_002375_020 0.0964161573 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
8 Hb_002027_260 0.096535278 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
9 Hb_000203_160 0.0980684373 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
10 Hb_003078_040 0.0984506146 - - PREDICTED: hit family protein 1 isoform X1 [Jatropha curcas]
11 Hb_001623_420 0.0986865713 - - nucleotide binding protein, putative [Ricinus communis]
12 Hb_010381_070 0.0999627045 - - PREDICTED: protein STU1-like [Jatropha curcas]
13 Hb_000139_410 0.1002028976 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
14 Hb_001488_070 0.1003436644 - - conserved hypothetical protein [Ricinus communis]
15 Hb_031527_040 0.1003715872 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
16 Hb_000866_270 0.1008514221 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
17 Hb_004491_010 0.1016252468 - - 60S ribosomal protein L51, putative [Ricinus communis]
18 Hb_000224_170 0.1018518401 - - hypothetical protein JCGZ_13777 [Jatropha curcas]
19 Hb_012634_010 0.1022891016 - - PREDICTED: uncharacterized protein LOC105110292 [Populus euphratica]
20 Hb_001301_160 0.1024622761 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002085_110 Hb_002085_110 Hb_126643_020 Hb_126643_020 Hb_002085_110--Hb_126643_020 Hb_002685_010 Hb_002685_010 Hb_002085_110--Hb_002685_010 Hb_002150_080 Hb_002150_080 Hb_002085_110--Hb_002150_080 Hb_001277_270 Hb_001277_270 Hb_002085_110--Hb_001277_270 Hb_002685_170 Hb_002685_170 Hb_002085_110--Hb_002685_170 Hb_002375_020 Hb_002375_020 Hb_002085_110--Hb_002375_020 Hb_000203_160 Hb_000203_160 Hb_126643_020--Hb_000203_160 Hb_126643_020--Hb_002685_010 Hb_002518_140 Hb_002518_140 Hb_126643_020--Hb_002518_140 Hb_005699_070 Hb_005699_070 Hb_126643_020--Hb_005699_070 Hb_004491_010 Hb_004491_010 Hb_126643_020--Hb_004491_010 Hb_002685_010--Hb_000203_160 Hb_000139_410 Hb_000139_410 Hb_002685_010--Hb_000139_410 Hb_000127_130 Hb_000127_130 Hb_002685_010--Hb_000127_130 Hb_002685_010--Hb_005699_070 Hb_002150_080--Hb_000139_410 Hb_000621_080 Hb_000621_080 Hb_002150_080--Hb_000621_080 Hb_002495_070 Hb_002495_070 Hb_002150_080--Hb_002495_070 Hb_010381_070 Hb_010381_070 Hb_002150_080--Hb_010381_070 Hb_002150_080--Hb_002685_170 Hb_000859_060 Hb_000859_060 Hb_001277_270--Hb_000859_060 Hb_001277_270--Hb_126643_020 Hb_004204_170 Hb_004204_170 Hb_001277_270--Hb_004204_170 Hb_001178_140 Hb_001178_140 Hb_001277_270--Hb_001178_140 Hb_000085_100 Hb_000085_100 Hb_001277_270--Hb_000085_100 Hb_002685_170--Hb_004491_010 Hb_005357_030 Hb_005357_030 Hb_002685_170--Hb_005357_030 Hb_004223_280 Hb_004223_280 Hb_002685_170--Hb_004223_280 Hb_007590_050 Hb_007590_050 Hb_002685_170--Hb_007590_050 Hb_028995_040 Hb_028995_040 Hb_002685_170--Hb_028995_040 Hb_003126_080 Hb_003126_080 Hb_002685_170--Hb_003126_080 Hb_002375_020--Hb_010381_070 Hb_000923_020 Hb_000923_020 Hb_002375_020--Hb_000923_020 Hb_001301_160 Hb_001301_160 Hb_002375_020--Hb_001301_160 Hb_002027_260 Hb_002027_260 Hb_002375_020--Hb_002027_260 Hb_004109_200 Hb_004109_200 Hb_002375_020--Hb_004109_200 Hb_006332_020 Hb_006332_020 Hb_002375_020--Hb_006332_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
216.871 135.543 71.9717 68.5365 155.954 113.19
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
120.236 201.365 176.126 97.1237 28.3257

CAGE analysis