Hb_002092_040

Information

Type -
Description -
Location Contig2092: 14572-15525
Sequence    

Annotation

kegg
ID pop:POPTR_0015s06400g
description protease inhibitor/seed storage/lipid transfer family protein
nr
ID XP_012093051.1
description PREDICTED: protein YLS3 [Jatropha curcas]
swissprot
ID O64864
description Protein YLS3 OS=Arabidopsis thaliana GN=YLS3 PE=2 SV=1
trembl
ID A0A067JKV1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05878 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002092_040 0.0 - - PREDICTED: protein YLS3 [Jatropha curcas]
2 Hb_018609_030 0.0977984168 - - conserved hypothetical protein [Ricinus communis]
3 Hb_155556_010 0.1895307048 - - putative methylenetetrahydrofolate reductase [Morus notabilis]
4 Hb_012071_010 0.1931873354 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
5 Hb_012295_020 0.1985017296 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
6 Hb_001780_010 0.2043581098 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
7 Hb_001652_110 0.222767445 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
8 Hb_000065_050 0.2241086978 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
9 Hb_005007_040 0.2416498502 - - hypothetical protein VITISV_032357 [Vitis vinifera]
10 Hb_000920_070 0.2575948282 - - -
11 Hb_001524_020 0.2576868633 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
12 Hb_188487_010 0.2662136937 - - hypothetical protein JCGZ_24382 [Jatropha curcas]
13 Hb_001304_120 0.268033597 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
14 Hb_001519_210 0.2682428052 - - hypothetical protein B456_003G032500 [Gossypium raimondii]
15 Hb_002774_010 0.2813347674 - - -
16 Hb_002675_120 0.2823297311 - - DNA-repair protein xrcc1, putative [Ricinus communis]
17 Hb_014324_010 0.2890346983 - - hypothetical protein JCGZ_05575 [Jatropha curcas]
18 Hb_032531_010 0.2901870082 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_003197_060 0.2943801293 - - hypothetical protein POPTR_0015s11900g [Populus trichocarpa]
20 Hb_095835_010 0.2943904885 - - hypothetical protein JCGZ_23410 [Jatropha curcas]

Gene co-expression network

sample Hb_002092_040 Hb_002092_040 Hb_018609_030 Hb_018609_030 Hb_002092_040--Hb_018609_030 Hb_155556_010 Hb_155556_010 Hb_002092_040--Hb_155556_010 Hb_012071_010 Hb_012071_010 Hb_002092_040--Hb_012071_010 Hb_012295_020 Hb_012295_020 Hb_002092_040--Hb_012295_020 Hb_001780_010 Hb_001780_010 Hb_002092_040--Hb_001780_010 Hb_001652_110 Hb_001652_110 Hb_002092_040--Hb_001652_110 Hb_018609_030--Hb_012071_010 Hb_018609_030--Hb_155556_010 Hb_018609_030--Hb_012295_020 Hb_018609_030--Hb_001780_010 Hb_001304_120 Hb_001304_120 Hb_018609_030--Hb_001304_120 Hb_155556_010--Hb_001780_010 Hb_000920_070 Hb_000920_070 Hb_155556_010--Hb_000920_070 Hb_155556_010--Hb_012071_010 Hb_155556_010--Hb_012295_020 Hb_001524_020 Hb_001524_020 Hb_155556_010--Hb_001524_020 Hb_001519_210 Hb_001519_210 Hb_155556_010--Hb_001519_210 Hb_012071_010--Hb_012295_020 Hb_000065_050 Hb_000065_050 Hb_012071_010--Hb_000065_050 Hb_032531_010 Hb_032531_010 Hb_012071_010--Hb_032531_010 Hb_012071_010--Hb_001519_210 Hb_050334_010 Hb_050334_010 Hb_012071_010--Hb_050334_010 Hb_012295_020--Hb_000065_050 Hb_012295_020--Hb_032531_010 Hb_012295_020--Hb_001519_210 Hb_012295_020--Hb_050334_010 Hb_001780_010--Hb_001524_020 Hb_001780_010--Hb_000920_070 Hb_002774_010 Hb_002774_010 Hb_001780_010--Hb_002774_010 Hb_188487_010 Hb_188487_010 Hb_001780_010--Hb_188487_010 Hb_001652_110--Hb_000065_050 Hb_000574_550 Hb_000574_550 Hb_001652_110--Hb_000574_550 Hb_005007_040 Hb_005007_040 Hb_001652_110--Hb_005007_040 Hb_001652_110--Hb_012071_010 Hb_006683_010 Hb_006683_010 Hb_001652_110--Hb_006683_010 Hb_001652_110--Hb_012295_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0576027 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.310863 0.48276 0.34358

CAGE analysis