Hb_002092_080

Information

Type -
Description -
Location Contig2092: 79617-85622
Sequence    

Annotation

kegg
ID rcu:RCOM_1617360
description serine/threonine protein phosphatase 2a regulatory subunit A, putative
nr
ID XP_012092991.1
description PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Jatropha curcas]
swissprot
ID Q38950
description Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Arabidopsis thaliana GN=PP2AA2 PE=1 SV=2
trembl
ID A0A067JKU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05873 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21631: 70818-79139 , PASA_asmbl_21634: 79646-85681
cDNA
(Sanger)
(ID:Location)		 005_B02.ab1: 79779-81207 , 007_H01.ab1: 79779-81204 , 014_M10.ab1: 79779-81193 , 024_G21.ab1: 79777-80780

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002092_080 0.0 - - PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Jatropha curcas]
2 Hb_004912_030 0.0657321125 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
3 Hb_001005_030 0.0706010031 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
4 Hb_001619_150 0.0720464035 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 isoform X1 [Jatropha curcas]
5 Hb_001077_030 0.0765572856 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
6 Hb_000139_260 0.0771658086 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
7 Hb_004785_100 0.0791743752 - - conserved hypothetical protein [Ricinus communis]
8 Hb_028308_010 0.0811006717 - - PREDICTED: probable protein S-acyltransferase 4 isoform X1 [Jatropha curcas]
9 Hb_001821_160 0.0820036577 - - serine/arginine rich splicing factor, putative [Ricinus communis]
10 Hb_005588_090 0.0828639315 - - hypothetical protein CICLE_v10003480mg [Citrus clementina]
11 Hb_003861_050 0.0837795441 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
12 Hb_002272_130 0.0843261456 - - PREDICTED: DNA excision repair protein ERCC-1 [Jatropha curcas]
13 Hb_000522_170 0.08552586 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
14 Hb_000130_420 0.0863599115 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
15 Hb_001089_070 0.0866698748 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
16 Hb_001369_130 0.0871745874 - - PREDICTED: autophagy-related protein 3 isoform X1 [Jatropha curcas]
17 Hb_002805_190 0.0880107023 - - spliceosome associated protein, putative [Ricinus communis]
18 Hb_000317_470 0.088690123 - - PREDICTED: CCR4-NOT transcription complex subunit 11 [Jatropha curcas]
19 Hb_000362_170 0.0890339981 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
20 Hb_000317_510 0.0905724712 - - PREDICTED: long chain base biosynthesis protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002092_080 Hb_002092_080 Hb_004912_030 Hb_004912_030 Hb_002092_080--Hb_004912_030 Hb_001005_030 Hb_001005_030 Hb_002092_080--Hb_001005_030 Hb_001619_150 Hb_001619_150 Hb_002092_080--Hb_001619_150 Hb_001077_030 Hb_001077_030 Hb_002092_080--Hb_001077_030 Hb_000139_260 Hb_000139_260 Hb_002092_080--Hb_000139_260 Hb_004785_100 Hb_004785_100 Hb_002092_080--Hb_004785_100 Hb_000130_420 Hb_000130_420 Hb_004912_030--Hb_000130_420 Hb_004912_030--Hb_001005_030 Hb_000243_210 Hb_000243_210 Hb_004912_030--Hb_000243_210 Hb_000362_170 Hb_000362_170 Hb_004912_030--Hb_000362_170 Hb_053079_020 Hb_053079_020 Hb_004912_030--Hb_053079_020 Hb_001005_030--Hb_000362_170 Hb_000373_080 Hb_000373_080 Hb_001005_030--Hb_000373_080 Hb_001269_230 Hb_001269_230 Hb_001005_030--Hb_001269_230 Hb_001635_040 Hb_001635_040 Hb_001005_030--Hb_001635_040 Hb_003186_020 Hb_003186_020 Hb_001005_030--Hb_003186_020 Hb_007765_080 Hb_007765_080 Hb_001619_150--Hb_007765_080 Hb_028308_010 Hb_028308_010 Hb_001619_150--Hb_028308_010 Hb_011618_080 Hb_011618_080 Hb_001619_150--Hb_011618_080 Hb_000855_020 Hb_000855_020 Hb_001619_150--Hb_000855_020 Hb_001619_150--Hb_004912_030 Hb_000718_070 Hb_000718_070 Hb_001077_030--Hb_000718_070 Hb_002311_070 Hb_002311_070 Hb_001077_030--Hb_002311_070 Hb_003096_060 Hb_003096_060 Hb_001077_030--Hb_003096_060 Hb_003680_230 Hb_003680_230 Hb_001077_030--Hb_003680_230 Hb_001135_120 Hb_001135_120 Hb_001077_030--Hb_001135_120 Hb_000922_020 Hb_000922_020 Hb_001077_030--Hb_000922_020 Hb_000006_010 Hb_000006_010 Hb_000139_260--Hb_000006_010 Hb_002014_040 Hb_002014_040 Hb_000139_260--Hb_002014_040 Hb_000139_260--Hb_001005_030 Hb_000139_260--Hb_004912_030 Hb_139002_010 Hb_139002_010 Hb_000139_260--Hb_139002_010 Hb_010272_010 Hb_010272_010 Hb_000139_260--Hb_010272_010 Hb_131646_010 Hb_131646_010 Hb_004785_100--Hb_131646_010 Hb_002835_230 Hb_002835_230 Hb_004785_100--Hb_002835_230 Hb_002686_250 Hb_002686_250 Hb_004785_100--Hb_002686_250 Hb_001821_160 Hb_001821_160 Hb_004785_100--Hb_001821_160 Hb_006960_050 Hb_006960_050 Hb_004785_100--Hb_006960_050 Hb_002078_110 Hb_002078_110 Hb_004785_100--Hb_002078_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.5838 33.3248 47.4486 34.8181 55.2417 33.4842
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.8698 18.1005 23.0253 28.9881 27.5533

CAGE analysis