Hb_002092_090

Information

Type -
Description -
Location Contig2092: 86156-92264
Sequence    

Annotation

kegg
ID rcu:RCOM_1617370
description protein with unknown function
nr
ID XP_012092990.1
description PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
swissprot
ID Q0IU52
description Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1
trembl
ID A0A067JBJ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05872 PE=4 SV=1
Gene Ontology
ID GO:0004190
description aspartic proteinase asp1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21635: 86165-92224 , PASA_asmbl_21636: 88686-89067
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002092_090 0.0 - - PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
2 Hb_006663_070 0.0943987742 - - PREDICTED: uncharacterized protein LOC105637432 [Jatropha curcas]
3 Hb_025012_010 0.1153237054 - - PREDICTED: importin-4 [Vitis vinifera]
4 Hb_042487_010 0.1159209353 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Jatropha curcas]
5 Hb_003711_040 0.1170808731 - - PREDICTED: UBX domain-containing protein 4 [Jatropha curcas]
6 Hb_001943_010 0.1174416434 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
7 Hb_012180_040 0.1210176448 - - hypothetical protein VITISV_042517 [Vitis vinifera]
8 Hb_002027_270 0.1236920093 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
9 Hb_006132_100 0.126145189 - - PREDICTED: uncharacterized protein LOC105642968 [Jatropha curcas]
10 Hb_003916_010 0.1263914761 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
11 Hb_000152_740 0.1266856197 - - Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]
12 Hb_000436_040 0.1267863475 - - PREDICTED: transportin-1 [Jatropha curcas]
13 Hb_001040_160 0.1283062977 - - glutaredoxin, grx, putative [Ricinus communis]
14 Hb_001575_040 0.1295752352 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 isoform X2 [Jatropha curcas]
15 Hb_002028_170 0.1297681021 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
16 Hb_081879_030 0.1310497434 - - PREDICTED: U3 small nucleolar RNA-associated protein 21 homolog [Jatropha curcas]
17 Hb_039253_010 0.1313265384 - - PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X2 [Jatropha curcas]
18 Hb_001609_010 0.1330432744 desease resistance Gene Name: NB-ARC PREDICTED: putative inactive disease susceptibility protein LOV1 [Jatropha curcas]
19 Hb_005000_100 0.1335868839 - - PCI domain-containing protein 2 [Morus notabilis]
20 Hb_000316_030 0.1342645953 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002092_090 Hb_002092_090 Hb_006663_070 Hb_006663_070 Hb_002092_090--Hb_006663_070 Hb_025012_010 Hb_025012_010 Hb_002092_090--Hb_025012_010 Hb_042487_010 Hb_042487_010 Hb_002092_090--Hb_042487_010 Hb_003711_040 Hb_003711_040 Hb_002092_090--Hb_003711_040 Hb_001943_010 Hb_001943_010 Hb_002092_090--Hb_001943_010 Hb_012180_040 Hb_012180_040 Hb_002092_090--Hb_012180_040 Hb_000679_150 Hb_000679_150 Hb_006663_070--Hb_000679_150 Hb_002601_130 Hb_002601_130 Hb_006663_070--Hb_002601_130 Hb_004619_050 Hb_004619_050 Hb_006663_070--Hb_004619_050 Hb_032458_010 Hb_032458_010 Hb_006663_070--Hb_032458_010 Hb_005679_050 Hb_005679_050 Hb_006663_070--Hb_005679_050 Hb_002027_270 Hb_002027_270 Hb_025012_010--Hb_002027_270 Hb_025012_010--Hb_004619_050 Hb_000347_130 Hb_000347_130 Hb_025012_010--Hb_000347_130 Hb_007904_220 Hb_007904_220 Hb_025012_010--Hb_007904_220 Hb_003428_070 Hb_003428_070 Hb_025012_010--Hb_003428_070 Hb_001040_160 Hb_001040_160 Hb_025012_010--Hb_001040_160 Hb_000699_250 Hb_000699_250 Hb_042487_010--Hb_000699_250 Hb_007849_020 Hb_007849_020 Hb_042487_010--Hb_007849_020 Hb_029142_010 Hb_029142_010 Hb_042487_010--Hb_029142_010 Hb_042487_010--Hb_025012_010 Hb_006816_300 Hb_006816_300 Hb_042487_010--Hb_006816_300 Hb_000340_160 Hb_000340_160 Hb_042487_010--Hb_000340_160 Hb_083043_010 Hb_083043_010 Hb_003711_040--Hb_083043_010 Hb_006455_090 Hb_006455_090 Hb_003711_040--Hb_006455_090 Hb_002811_120 Hb_002811_120 Hb_003711_040--Hb_002811_120 Hb_004881_050 Hb_004881_050 Hb_003711_040--Hb_004881_050 Hb_001609_010 Hb_001609_010 Hb_003711_040--Hb_001609_010 Hb_005000_270 Hb_005000_270 Hb_003711_040--Hb_005000_270 Hb_005205_020 Hb_005205_020 Hb_001943_010--Hb_005205_020 Hb_000370_030 Hb_000370_030 Hb_001943_010--Hb_000370_030 Hb_000184_130 Hb_000184_130 Hb_001943_010--Hb_000184_130 Hb_001943_010--Hb_025012_010 Hb_000316_030 Hb_000316_030 Hb_001943_010--Hb_000316_030 Hb_001771_130 Hb_001771_130 Hb_001943_010--Hb_001771_130 Hb_012180_040--Hb_006663_070 Hb_000158_100 Hb_000158_100 Hb_012180_040--Hb_000158_100 Hb_000136_060 Hb_000136_060 Hb_012180_040--Hb_000136_060 Hb_012180_030 Hb_012180_030 Hb_012180_040--Hb_012180_030 Hb_058702_010 Hb_058702_010 Hb_012180_040--Hb_058702_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
61.4323 30.2871 7.51871 29.8589 44.9949 161.807
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.4628 17.3204 28.0191 52.9239 26.1589

CAGE analysis