Hb_002092_100

Information

Type -
Description -
Location Contig2092: 98959-125201
Sequence    

Annotation

kegg
ID rcu:RCOM_1617380
description protein binding protein, putative
nr
ID XP_012092989.1
description PREDICTED: actin-related protein 4-like [Jatropha curcas]
swissprot
ID Q84M92
description Actin-related protein 4 OS=Arabidopsis thaliana GN=ARP4 PE=1 SV=1
trembl
ID A0A067J8R0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05871 PE=3 SV=1
Gene Ontology
ID GO:0000812
description actin-related protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21637: 98614-125195
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002092_100 0.0 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
2 Hb_000156_160 0.0716702443 - - PREDICTED: urease accessory protein G [Jatropha curcas]
3 Hb_005053_010 0.0795145886 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
4 Hb_002805_060 0.0801579285 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
5 Hb_027380_030 0.0831401921 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
6 Hb_016734_090 0.0847390054 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
7 Hb_002681_170 0.086312491 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
8 Hb_002896_060 0.0869658928 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
9 Hb_001301_220 0.0870149843 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
10 Hb_000661_020 0.0879094234 - - BnaC08g27190D [Brassica napus]
11 Hb_006915_020 0.088117211 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
12 Hb_007929_080 0.0904205175 - - PREDICTED: transforming growth factor-beta receptor-associated protein 1 [Jatropha curcas]
13 Hb_000922_020 0.093981735 - - protein binding protein, putative [Ricinus communis]
14 Hb_000453_140 0.0947227353 - - hypothetical protein POPTR_0009s02600g [Populus trichocarpa]
15 Hb_000922_140 0.0953735628 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
16 Hb_011609_170 0.0955667659 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
17 Hb_011915_010 0.0998996933 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
18 Hb_003894_040 0.0999542525 - - nucleotide binding protein, putative [Ricinus communis]
19 Hb_000076_260 0.1003337758 - - hypothetical protein GUITHDRAFT_149979 [Guillardia theta CCMP2712]
20 Hb_002739_130 0.1004126816 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Populus euphratica]

Gene co-expression network

sample Hb_002092_100 Hb_002092_100 Hb_000156_160 Hb_000156_160 Hb_002092_100--Hb_000156_160 Hb_005053_010 Hb_005053_010 Hb_002092_100--Hb_005053_010 Hb_002805_060 Hb_002805_060 Hb_002092_100--Hb_002805_060 Hb_027380_030 Hb_027380_030 Hb_002092_100--Hb_027380_030 Hb_016734_090 Hb_016734_090 Hb_002092_100--Hb_016734_090 Hb_002681_170 Hb_002681_170 Hb_002092_100--Hb_002681_170 Hb_005288_080 Hb_005288_080 Hb_000156_160--Hb_005288_080 Hb_000922_020 Hb_000922_020 Hb_000156_160--Hb_000922_020 Hb_000156_160--Hb_016734_090 Hb_000661_020 Hb_000661_020 Hb_000156_160--Hb_000661_020 Hb_011918_050 Hb_011918_050 Hb_000156_160--Hb_011918_050 Hb_160459_040 Hb_160459_040 Hb_005053_010--Hb_160459_040 Hb_009771_110 Hb_009771_110 Hb_005053_010--Hb_009771_110 Hb_006618_090 Hb_006618_090 Hb_005053_010--Hb_006618_090 Hb_001504_040 Hb_001504_040 Hb_005053_010--Hb_001504_040 Hb_007929_080 Hb_007929_080 Hb_005053_010--Hb_007929_080 Hb_003104_040 Hb_003104_040 Hb_005053_010--Hb_003104_040 Hb_002805_060--Hb_027380_030 Hb_000599_170 Hb_000599_170 Hb_002805_060--Hb_000599_170 Hb_003894_040 Hb_003894_040 Hb_002805_060--Hb_003894_040 Hb_002805_060--Hb_002681_170 Hb_002896_060 Hb_002896_060 Hb_002805_060--Hb_002896_060 Hb_027380_030--Hb_000599_170 Hb_027380_030--Hb_002896_060 Hb_001051_090 Hb_001051_090 Hb_027380_030--Hb_001051_090 Hb_000453_140 Hb_000453_140 Hb_027380_030--Hb_000453_140 Hb_006915_020 Hb_006915_020 Hb_027380_030--Hb_006915_020 Hb_002739_130 Hb_002739_130 Hb_016734_090--Hb_002739_130 Hb_016734_090--Hb_011918_050 Hb_006452_160 Hb_006452_160 Hb_016734_090--Hb_006452_160 Hb_001269_200 Hb_001269_200 Hb_016734_090--Hb_001269_200 Hb_000563_330 Hb_000563_330 Hb_016734_090--Hb_000563_330 Hb_016734_090--Hb_000661_020 Hb_002249_120 Hb_002249_120 Hb_002681_170--Hb_002249_120 Hb_000031_280 Hb_000031_280 Hb_002681_170--Hb_000031_280 Hb_008556_030 Hb_008556_030 Hb_002681_170--Hb_008556_030 Hb_000809_210 Hb_000809_210 Hb_002681_170--Hb_000809_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3492 9.34221 14.6477 6.61659 16.7641 12.8508
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.5256 2.54134 3.16226 6.60271 7.81514

CAGE analysis