Hb_002093_020

Information

Type -
Description -
Location Contig2093: 37388-37738
Sequence    

Annotation

kegg
ID pop:POPTR_0008s02960g
description hypothetical protein
nr
ID XP_006379504.1
description hypothetical protein POPTR_0008s02960g [Populus trichocarpa]
swissprot
ID Q9LZ60
description Cyclin-dependent protein kinase inhibitor SMR3 OS=Arabidopsis thaliana GN=SMR3 PE=2 SV=1
trembl
ID U5G4W0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s02960g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002093_020 0.0 - - hypothetical protein POPTR_0008s02960g [Populus trichocarpa]
2 Hb_001751_050 0.0218710635 - - PREDICTED: phytol kinase 1, chloroplastic [Jatropha curcas]
3 Hb_000008_160 0.0657972905 - - carboxy-lyase, putative [Ricinus communis]
4 Hb_087599_010 0.0729224164 - - PREDICTED: tropinone reductase homolog [Solanum tuberosum]
5 Hb_001766_160 0.0742985497 - - Serine/threonine-protein kinase SAPK1 [Gossypium arboreum]
6 Hb_000531_100 0.0748843879 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
7 Hb_005276_080 0.0761997684 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
8 Hb_005649_060 0.0773078812 - - PREDICTED: uncharacterized protein LOC105644161 [Jatropha curcas]
9 Hb_013726_060 0.0801204092 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
10 Hb_007477_060 0.0874642069 - - unknown [Medicago truncatula]
11 Hb_117807_020 0.0894293482 - - methyltransferase, putative [Ricinus communis]
12 Hb_001006_160 0.0910711662 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
13 Hb_002762_050 0.0912047808 - - PREDICTED: uncharacterized protein LOC105640359 [Jatropha curcas]
14 Hb_080922_010 0.091637947 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
15 Hb_003536_020 0.0921558272 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
16 Hb_003777_080 0.0923582094 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Populus euphratica]
17 Hb_006665_020 0.0924460109 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
18 Hb_012807_030 0.0929596998 - - PREDICTED: uncharacterized protein LOC105628042 isoform X1 [Jatropha curcas]
19 Hb_001322_120 0.0936066319 - - nutrient reservoir, putative [Ricinus communis]
20 Hb_000115_020 0.0936812837 transcription factor TF Family: C2C2-CO-like zinc finger family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_002093_020 Hb_002093_020 Hb_001751_050 Hb_001751_050 Hb_002093_020--Hb_001751_050 Hb_000008_160 Hb_000008_160 Hb_002093_020--Hb_000008_160 Hb_087599_010 Hb_087599_010 Hb_002093_020--Hb_087599_010 Hb_001766_160 Hb_001766_160 Hb_002093_020--Hb_001766_160 Hb_000531_100 Hb_000531_100 Hb_002093_020--Hb_000531_100 Hb_005276_080 Hb_005276_080 Hb_002093_020--Hb_005276_080 Hb_001751_050--Hb_000531_100 Hb_013726_060 Hb_013726_060 Hb_001751_050--Hb_013726_060 Hb_001751_050--Hb_005276_080 Hb_001751_050--Hb_001766_160 Hb_001751_050--Hb_000008_160 Hb_000185_010 Hb_000185_010 Hb_000008_160--Hb_000185_010 Hb_002870_070 Hb_002870_070 Hb_000008_160--Hb_002870_070 Hb_002762_050 Hb_002762_050 Hb_000008_160--Hb_002762_050 Hb_000008_160--Hb_087599_010 Hb_000694_080 Hb_000694_080 Hb_087599_010--Hb_000694_080 Hb_003777_080 Hb_003777_080 Hb_087599_010--Hb_003777_080 Hb_087599_010--Hb_002762_050 Hb_087599_010--Hb_000185_010 Hb_153258_040 Hb_153258_040 Hb_087599_010--Hb_153258_040 Hb_001322_120 Hb_001322_120 Hb_001766_160--Hb_001322_120 Hb_005649_060 Hb_005649_060 Hb_001766_160--Hb_005649_060 Hb_007477_060 Hb_007477_060 Hb_001766_160--Hb_007477_060 Hb_001766_160--Hb_000531_100 Hb_002871_180 Hb_002871_180 Hb_001766_160--Hb_002871_180 Hb_001006_150 Hb_001006_150 Hb_001766_160--Hb_001006_150 Hb_000531_100--Hb_013726_060 Hb_001292_030 Hb_001292_030 Hb_000531_100--Hb_001292_030 Hb_002529_120 Hb_002529_120 Hb_000531_100--Hb_002529_120 Hb_000230_420 Hb_000230_420 Hb_000531_100--Hb_000230_420 Hb_000531_100--Hb_001322_120 Hb_000531_100--Hb_005276_080 Hb_001006_160 Hb_001006_160 Hb_005276_080--Hb_001006_160 Hb_006665_020 Hb_006665_020 Hb_005276_080--Hb_006665_020 Hb_000450_050 Hb_000450_050 Hb_005276_080--Hb_000450_050 Hb_000589_340 Hb_000589_340 Hb_005276_080--Hb_000589_340 Hb_000676_320 Hb_000676_320 Hb_005276_080--Hb_000676_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.41795 29.1766 6.6548 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.26649 42.3182

CAGE analysis