Hb_002093_030

Information

Type -
Description -
Location Contig2093: 53722-58867
Sequence    

Annotation

kegg
ID pop:POPTR_0008s02950g
description hypothetical protein
nr
ID XP_012090336.1
description PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L9C3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01561 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21651: 53928-58070
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002093_030 0.0 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
2 Hb_002749_110 0.0623280943 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
3 Hb_003126_100 0.0695516194 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
4 Hb_022693_030 0.069637709 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
5 Hb_000152_260 0.071608783 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
6 Hb_008556_030 0.0748542243 - - PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]
7 Hb_001828_160 0.0767691261 - - hypothetical protein F775_31105 [Aegilops tauschii]
8 Hb_007044_040 0.0792851 - - PREDICTED: uncharacterized protein LOC105646814 [Jatropha curcas]
9 Hb_001427_190 0.0794833228 - - PREDICTED: histone acetyltransferase type B catalytic subunit [Jatropha curcas]
10 Hb_005892_030 0.0816996042 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
11 Hb_000913_050 0.0819197265 - - hypothetical protein JCGZ_17329 [Jatropha curcas]
12 Hb_022256_060 0.0825919135 - - PREDICTED: uncharacterized protein LOC105628137 [Jatropha curcas]
13 Hb_150651_030 0.0827482186 - - PREDICTED: metallophosphoesterase 1-like [Jatropha curcas]
14 Hb_001418_040 0.0839494197 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [Jatropha curcas]
15 Hb_000914_080 0.0859158374 - - ubiquitin-protein ligase, putative [Ricinus communis]
16 Hb_004951_070 0.0870726951 desease resistance Gene Name: AAA Stage III sporulation protein AA, putative [Ricinus communis]
17 Hb_027472_120 0.0871138013 - - PREDICTED: thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_021422_010 0.0875835685 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Jatropha curcas]
19 Hb_000922_020 0.0883884428 - - protein binding protein, putative [Ricinus communis]
20 Hb_003878_110 0.0885596135 - - PREDICTED: uncharacterized protein LOC105637024 [Jatropha curcas]

Gene co-expression network

sample Hb_002093_030 Hb_002093_030 Hb_002749_110 Hb_002749_110 Hb_002093_030--Hb_002749_110 Hb_003126_100 Hb_003126_100 Hb_002093_030--Hb_003126_100 Hb_022693_030 Hb_022693_030 Hb_002093_030--Hb_022693_030 Hb_000152_260 Hb_000152_260 Hb_002093_030--Hb_000152_260 Hb_008556_030 Hb_008556_030 Hb_002093_030--Hb_008556_030 Hb_001828_160 Hb_001828_160 Hb_002093_030--Hb_001828_160 Hb_002749_110--Hb_000152_260 Hb_001473_090 Hb_001473_090 Hb_002749_110--Hb_001473_090 Hb_001599_030 Hb_001599_030 Hb_002749_110--Hb_001599_030 Hb_000107_400 Hb_000107_400 Hb_002749_110--Hb_000107_400 Hb_002749_110--Hb_003126_100 Hb_002888_070 Hb_002888_070 Hb_003126_100--Hb_002888_070 Hb_000480_010 Hb_000480_010 Hb_003126_100--Hb_000480_010 Hb_000002_490 Hb_000002_490 Hb_003126_100--Hb_000002_490 Hb_000914_080 Hb_000914_080 Hb_003126_100--Hb_000914_080 Hb_002301_270 Hb_002301_270 Hb_022693_030--Hb_002301_270 Hb_009151_020 Hb_009151_020 Hb_022693_030--Hb_009151_020 Hb_022693_030--Hb_002749_110 Hb_005892_030 Hb_005892_030 Hb_022693_030--Hb_005892_030 Hb_000347_570 Hb_000347_570 Hb_022693_030--Hb_000347_570 Hb_001427_190 Hb_001427_190 Hb_000152_260--Hb_001427_190 Hb_002422_050 Hb_002422_050 Hb_000152_260--Hb_002422_050 Hb_160459_040 Hb_160459_040 Hb_000152_260--Hb_160459_040 Hb_002374_260 Hb_002374_260 Hb_000152_260--Hb_002374_260 Hb_003878_110 Hb_003878_110 Hb_000152_260--Hb_003878_110 Hb_002836_140 Hb_002836_140 Hb_008556_030--Hb_002836_140 Hb_001418_040 Hb_001418_040 Hb_008556_030--Hb_001418_040 Hb_000797_050 Hb_000797_050 Hb_008556_030--Hb_000797_050 Hb_002942_050 Hb_002942_050 Hb_008556_030--Hb_002942_050 Hb_000031_280 Hb_000031_280 Hb_008556_030--Hb_000031_280 Hb_000207_310 Hb_000207_310 Hb_001828_160--Hb_000207_310 Hb_000913_050 Hb_000913_050 Hb_001828_160--Hb_000913_050 Hb_021422_010 Hb_021422_010 Hb_001828_160--Hb_021422_010 Hb_006620_020 Hb_006620_020 Hb_001828_160--Hb_006620_020 Hb_000116_180 Hb_000116_180 Hb_001828_160--Hb_000116_180 Hb_001545_200 Hb_001545_200 Hb_001828_160--Hb_001545_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.912 12.8859 20.1948 11.1373 31.2353 25.912
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.4439 11.2457 6.92929 12.2294 16.0821

CAGE analysis