Hb_002094_020

Information

Type -
Description -
Location Contig2094: 51743-54714
Sequence    

Annotation

kegg
ID rcu:RCOM_0179780
description (+)-delta-cadinene synthase isozyme A, putative (EC:4.2.3.13)
nr
ID XP_012071210.1
description PREDICTED: alpha-copaene synthase-like [Jatropha curcas]
swissprot
ID B9S9Z3
description Alpha-copaene synthase OS=Ricinus communis GN=TPS1 PE=1 SV=1
trembl
ID A0A067L3D8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00777 PE=4 SV=1
Gene Ontology
ID GO:0047461
description alpha-copaene synthase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002094_020 0.0 - - PREDICTED: alpha-copaene synthase-like [Jatropha curcas]
2 Hb_017111_010 0.1728706316 - - PREDICTED: inositol transporter 4 [Jatropha curcas]
3 Hb_027751_030 0.1793529519 - - -
4 Hb_000959_360 0.1869261489 - - transporter, putative [Ricinus communis]
5 Hb_001230_010 0.187166664 - - -
6 Hb_000928_230 0.1954056592 - - conserved hypothetical protein [Ricinus communis]
7 Hb_126669_010 0.1956004349 transcription factor TF Family: bHLH lMYC4 [Hevea brasiliensis]
8 Hb_002007_290 0.2029194457 - - -
9 Hb_003687_200 0.2033125636 - - PREDICTED: uncharacterized protein LOC105632139 [Jatropha curcas]
10 Hb_027751_040 0.2098698714 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
11 Hb_000523_020 0.2235512814 - - PREDICTED: uncharacterized protein LOC105650610 [Jatropha curcas]
12 Hb_000270_400 0.2368814263 - - lipase, putative [Ricinus communis]
13 Hb_003745_010 0.2380759661 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
14 Hb_007545_210 0.2381402123 transcription factor TF Family: C2C2-Dof PREDICTED: cyclic dof factor 3-like [Jatropha curcas]
15 Hb_000186_100 0.2394299493 - - PREDICTED: uncharacterized protein LOC105649284 isoform X1 [Jatropha curcas]
16 Hb_001993_020 0.2400716667 - - hypothetical protein JCGZ_02641 [Jatropha curcas]
17 Hb_003756_010 0.2439253583 - - PREDICTED: uncharacterized protein LOC105642108 [Jatropha curcas]
18 Hb_002388_060 0.245010334 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002843_190 0.2457641935 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 7 isoform X1 [Jatropha curcas]
20 Hb_000373_290 0.2472196041 - - RecName: Full=Citrate-binding protein; Flags: Precursor [Hevea brasiliensis]

Gene co-expression network

sample Hb_002094_020 Hb_002094_020 Hb_017111_010 Hb_017111_010 Hb_002094_020--Hb_017111_010 Hb_027751_030 Hb_027751_030 Hb_002094_020--Hb_027751_030 Hb_000959_360 Hb_000959_360 Hb_002094_020--Hb_000959_360 Hb_001230_010 Hb_001230_010 Hb_002094_020--Hb_001230_010 Hb_000928_230 Hb_000928_230 Hb_002094_020--Hb_000928_230 Hb_126669_010 Hb_126669_010 Hb_002094_020--Hb_126669_010 Hb_000186_100 Hb_000186_100 Hb_017111_010--Hb_000186_100 Hb_000523_020 Hb_000523_020 Hb_017111_010--Hb_000523_020 Hb_002388_060 Hb_002388_060 Hb_017111_010--Hb_002388_060 Hb_003687_200 Hb_003687_200 Hb_017111_010--Hb_003687_200 Hb_007545_210 Hb_007545_210 Hb_017111_010--Hb_007545_210 Hb_017111_010--Hb_126669_010 Hb_027751_040 Hb_027751_040 Hb_027751_030--Hb_027751_040 Hb_002843_190 Hb_002843_190 Hb_027751_030--Hb_002843_190 Hb_000284_160 Hb_000284_160 Hb_027751_030--Hb_000284_160 Hb_026766_010 Hb_026766_010 Hb_027751_030--Hb_026766_010 Hb_027751_030--Hb_001230_010 Hb_000548_030 Hb_000548_030 Hb_000959_360--Hb_000548_030 Hb_000959_360--Hb_002388_060 Hb_000641_030 Hb_000641_030 Hb_000959_360--Hb_000641_030 Hb_001980_020 Hb_001980_020 Hb_000959_360--Hb_001980_020 Hb_000373_290 Hb_000373_290 Hb_000959_360--Hb_000373_290 Hb_002007_290 Hb_002007_290 Hb_001230_010--Hb_002007_290 Hb_166786_030 Hb_166786_030 Hb_001230_010--Hb_166786_030 Hb_001230_010--Hb_000928_230 Hb_031862_050 Hb_031862_050 Hb_001230_010--Hb_031862_050 Hb_001230_010--Hb_017111_010 Hb_000928_230--Hb_126669_010 Hb_000270_400 Hb_000270_400 Hb_000928_230--Hb_000270_400 Hb_000928_230--Hb_000523_020 Hb_002627_060 Hb_002627_060 Hb_000928_230--Hb_002627_060 Hb_000172_610 Hb_000172_610 Hb_000928_230--Hb_000172_610 Hb_170116_010 Hb_170116_010 Hb_000928_230--Hb_170116_010 Hb_126669_010--Hb_000523_020 Hb_126669_010--Hb_000270_400 Hb_126669_010--Hb_002627_060 Hb_126669_010--Hb_000172_610 Hb_000376_150 Hb_000376_150 Hb_126669_010--Hb_000376_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.53845 0.0123077 0.00970643 0.242683 0.785079 1.78529
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.28254 0.620776 0.25074 0 0

CAGE analysis