Hb_002094_040

Information

Type -
Description -
Location Contig2094: 62655-63806
Sequence    

Annotation

kegg
ID aag:AaeL_AAEL012443
description sugar transporter
nr
ID EMT05263.1
description Organic cation transporter protein [Aegilops tauschii]
swissprot
ID -
description -
trembl
ID M0WDJ5
description Uncharacterized protein OS=Hordeum vulgare var. distichum PE=4 SV=1
Gene Ontology
ID GO:0044699
description organic cation carnitine transporter 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002094_040 0.0 - - Organic cation transporter protein [Aegilops tauschii]
2 Hb_001386_080 0.1439686172 - - hypothetical protein JCGZ_06052 [Jatropha curcas]
3 Hb_002997_130 0.186847932 - - -
4 Hb_028462_010 0.1869619949 - - PREDICTED: uncharacterized protein LOC101509514 [Cicer arietinum]
5 Hb_123098_010 0.1869628451 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_004899_270 0.1869693017 - - PREDICTED: beta-galactosidase 15-like [Cucumis sativus]
7 Hb_000111_160 0.1869780573 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
8 Hb_018006_020 0.186997364 - - PREDICTED: uncharacterized protein LOC105641417 [Jatropha curcas]
9 Hb_006053_010 0.1870027826 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
10 Hb_000914_160 0.1870066528 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Glycine max]
11 Hb_007393_010 0.1870126159 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
12 Hb_000413_310 0.1870435117 - - -
13 Hb_000098_160 0.1870475197 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003052_160 0.1870475197 - - -
15 Hb_002130_010 0.1870678528 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
16 Hb_061463_010 0.1870719189 - - Cucumisin precursor, putative [Ricinus communis]
17 Hb_185616_010 0.1870836925 - - Ran GTPase binding protein, putative [Ricinus communis]
18 Hb_012543_020 0.1870859009 - - -
19 Hb_000482_130 0.1870872778 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
20 Hb_000510_380 0.1870888229 - - -

Gene co-expression network

sample Hb_002094_040 Hb_002094_040 Hb_001386_080 Hb_001386_080 Hb_002094_040--Hb_001386_080 Hb_002997_130 Hb_002997_130 Hb_002094_040--Hb_002997_130 Hb_028462_010 Hb_028462_010 Hb_002094_040--Hb_028462_010 Hb_123098_010 Hb_123098_010 Hb_002094_040--Hb_123098_010 Hb_004899_270 Hb_004899_270 Hb_002094_040--Hb_004899_270 Hb_000111_160 Hb_000111_160 Hb_002094_040--Hb_000111_160 Hb_008092_140 Hb_008092_140 Hb_001386_080--Hb_008092_140 Hb_001386_080--Hb_002997_130 Hb_001386_080--Hb_028462_010 Hb_001386_080--Hb_123098_010 Hb_001386_080--Hb_004899_270 Hb_002997_130--Hb_028462_010 Hb_002997_130--Hb_123098_010 Hb_002997_130--Hb_004899_270 Hb_002997_130--Hb_000111_160 Hb_018006_020 Hb_018006_020 Hb_002997_130--Hb_018006_020 Hb_006053_010 Hb_006053_010 Hb_002997_130--Hb_006053_010 Hb_028462_010--Hb_123098_010 Hb_028462_010--Hb_004899_270 Hb_028462_010--Hb_000111_160 Hb_028462_010--Hb_018006_020 Hb_028462_010--Hb_006053_010 Hb_000914_160 Hb_000914_160 Hb_028462_010--Hb_000914_160 Hb_123098_010--Hb_004899_270 Hb_123098_010--Hb_000111_160 Hb_123098_010--Hb_018006_020 Hb_123098_010--Hb_006053_010 Hb_123098_010--Hb_000914_160 Hb_004899_270--Hb_000111_160 Hb_004899_270--Hb_018006_020 Hb_004899_270--Hb_006053_010 Hb_004899_270--Hb_000914_160 Hb_000111_160--Hb_018006_020 Hb_000111_160--Hb_006053_010 Hb_000111_160--Hb_000914_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.036494 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.272511 0.285601 0 0 0

CAGE analysis