Hb_002095_010

Information

Type -
Description -
Location Contig2095: 17597-23016
Sequence    

Annotation

kegg
ID rcu:RCOM_0487570
description glutamate receptor 3 plant, putative
nr
ID XP_012086329.1
description PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
swissprot
ID Q9SDQ4
description Glutamate receptor 3.7 OS=Arabidopsis thaliana GN=GLR3.7 PE=2 SV=2
trembl
ID A0A067JPN4
description Glutamate receptor OS=Jatropha curcas GN=JCGZ_22867 PE=3 SV=1
Gene Ontology
ID GO:0005622
description glutamate receptor -like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21660: 17874-22980 , PASA_asmbl_21661: 20654-21137
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002095_010 0.0 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
2 Hb_010710_070 0.0762878328 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
3 Hb_028912_050 0.0792817666 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
4 Hb_000005_190 0.084143074 - - hypothetical protein JCGZ_05438 [Jatropha curcas]
5 Hb_006660_010 0.0879366032 - - PREDICTED: exocyst complex component EXO84C isoform X1 [Jatropha curcas]
6 Hb_000739_310 0.091389657 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
7 Hb_004963_030 0.0939690634 - - PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Jatropha curcas]
8 Hb_188063_020 0.0940843237 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007805_010 0.0942616778 - - PREDICTED: ribosome biogenesis protein BMS1 homolog [Jatropha curcas]
10 Hb_000201_110 0.0951822477 - - hypothetical protein JCGZ_21690 [Jatropha curcas]
11 Hb_002271_030 0.0969170067 - - Vacuolar protein sorting protein, putative [Ricinus communis]
12 Hb_012799_030 0.100763008 - - PREDICTED: pentatricopeptide repeat-containing protein At1g55630-like [Jatropha curcas]
13 Hb_003294_090 0.101777005 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004994_380 0.1021863002 - - hypothetical protein JCGZ_14410 [Jatropha curcas]
15 Hb_007317_140 0.102932513 - - expressed protein, putative [Ricinus communis]
16 Hb_000034_040 0.1038164543 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
17 Hb_004225_050 0.1039761104 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
18 Hb_000352_190 0.105173967 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 41 [Jatropha curcas]
19 Hb_028089_010 0.1058286339 - - PREDICTED: homoserine dehydrogenase [Jatropha curcas]
20 Hb_024570_010 0.105952314 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]

Gene co-expression network

sample Hb_002095_010 Hb_002095_010 Hb_010710_070 Hb_010710_070 Hb_002095_010--Hb_010710_070 Hb_028912_050 Hb_028912_050 Hb_002095_010--Hb_028912_050 Hb_000005_190 Hb_000005_190 Hb_002095_010--Hb_000005_190 Hb_006660_010 Hb_006660_010 Hb_002095_010--Hb_006660_010 Hb_000739_310 Hb_000739_310 Hb_002095_010--Hb_000739_310 Hb_004963_030 Hb_004963_030 Hb_002095_010--Hb_004963_030 Hb_010710_070--Hb_004963_030 Hb_010710_070--Hb_028912_050 Hb_188063_020 Hb_188063_020 Hb_010710_070--Hb_188063_020 Hb_004994_380 Hb_004994_380 Hb_010710_070--Hb_004994_380 Hb_002849_100 Hb_002849_100 Hb_010710_070--Hb_002849_100 Hb_001442_040 Hb_001442_040 Hb_010710_070--Hb_001442_040 Hb_004225_050 Hb_004225_050 Hb_028912_050--Hb_004225_050 Hb_028912_050--Hb_188063_020 Hb_000028_480 Hb_000028_480 Hb_028912_050--Hb_000028_480 Hb_028912_050--Hb_004963_030 Hb_001008_120 Hb_001008_120 Hb_028912_050--Hb_001008_120 Hb_188126_010 Hb_188126_010 Hb_000005_190--Hb_188126_010 Hb_000005_190--Hb_010710_070 Hb_012733_030 Hb_012733_030 Hb_000005_190--Hb_012733_030 Hb_003544_140 Hb_003544_140 Hb_000005_190--Hb_003544_140 Hb_000207_180 Hb_000207_180 Hb_000005_190--Hb_000207_180 Hb_007803_050 Hb_007803_050 Hb_006660_010--Hb_007803_050 Hb_011310_160 Hb_011310_160 Hb_006660_010--Hb_011310_160 Hb_002811_060 Hb_002811_060 Hb_006660_010--Hb_002811_060 Hb_000212_310 Hb_000212_310 Hb_006660_010--Hb_000212_310 Hb_007062_020 Hb_007062_020 Hb_006660_010--Hb_007062_020 Hb_000592_030 Hb_000592_030 Hb_006660_010--Hb_000592_030 Hb_000707_050 Hb_000707_050 Hb_000739_310--Hb_000707_050 Hb_000832_020 Hb_000832_020 Hb_000739_310--Hb_000832_020 Hb_007545_030 Hb_007545_030 Hb_000739_310--Hb_007545_030 Hb_024570_010 Hb_024570_010 Hb_000739_310--Hb_024570_010 Hb_000796_040 Hb_000796_040 Hb_000739_310--Hb_000796_040 Hb_001019_190 Hb_001019_190 Hb_000739_310--Hb_001019_190 Hb_004963_030--Hb_001442_040 Hb_004963_030--Hb_188063_020 Hb_001014_160 Hb_001014_160 Hb_004963_030--Hb_001014_160 Hb_000343_250 Hb_000343_250 Hb_004963_030--Hb_000343_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.2293 10.9965 14.1254 10.4374 21.429 32.0936
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0764 11.5109 26.1068 20.4682 25.2665

CAGE analysis