Hb_002097_020

Information

Type -
Description -
Location Contig2097: 99039-105593
Sequence    

Annotation

kegg
ID vvi:104879859
description serine/threonine-protein phosphatase 7 long form homolog
nr
ID XP_010942698.1
description PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
swissprot
ID Q9LNG5
description Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana GN=At1g48120 PE=2 SV=1
trembl
ID A5BJW1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008825 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002097_020 0.0 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
2 Hb_001391_120 0.2320335999 - - Acetyl esterase, putative [Ricinus communis]
3 Hb_001100_030 0.296970856 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
4 Hb_002376_030 0.3043717677 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_001652_050 0.3065398684 - - -
6 Hb_005288_040 0.3067605519 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]
7 Hb_032631_010 0.3074958164 - - PREDICTED: uncharacterized protein LOC105638774 [Jatropha curcas]
8 Hb_003086_180 0.3143173608 - - PREDICTED: RING-H2 finger protein ATL70-like [Pyrus x bretschneideri]
9 Hb_023774_010 0.3146911568 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
10 Hb_008020_010 0.3149129831 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like [Jatropha curcas]
11 Hb_000613_270 0.3158937472 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
12 Hb_000220_160 0.3171308159 - - hypothetical protein B456_003G184800 [Gossypium raimondii]
13 Hb_008225_100 0.3181094673 - - -
14 Hb_001798_020 0.3185686858 - - PREDICTED: uncharacterized protein LOC104594032 [Nelumbo nucifera]
15 Hb_002157_180 0.318909356 - - separase, putative [Ricinus communis]
16 Hb_099198_010 0.3189275079 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 isoform X2 [Nicotiana tomentosiformis]
17 Hb_002171_070 0.3192537813 desease resistance Gene Name: NB-ARC NBS-LRR resistance gene-like protein ARGH30 [Populus trichocarpa]
18 Hb_000597_110 0.3194613926 - - PREDICTED: VQ motif-containing protein 22-like [Jatropha curcas]
19 Hb_047923_010 0.3217776078 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
20 Hb_001006_200 0.3222140924 transcription factor TF Family: G2-like conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002097_020 Hb_002097_020 Hb_001391_120 Hb_001391_120 Hb_002097_020--Hb_001391_120 Hb_001100_030 Hb_001100_030 Hb_002097_020--Hb_001100_030 Hb_002376_030 Hb_002376_030 Hb_002097_020--Hb_002376_030 Hb_001652_050 Hb_001652_050 Hb_002097_020--Hb_001652_050 Hb_005288_040 Hb_005288_040 Hb_002097_020--Hb_005288_040 Hb_032631_010 Hb_032631_010 Hb_002097_020--Hb_032631_010 Hb_001798_020 Hb_001798_020 Hb_001391_120--Hb_001798_020 Hb_001104_050 Hb_001104_050 Hb_001391_120--Hb_001104_050 Hb_020178_010 Hb_020178_010 Hb_001391_120--Hb_020178_010 Hb_009775_040 Hb_009775_040 Hb_001391_120--Hb_009775_040 Hb_015909_010 Hb_015909_010 Hb_001391_120--Hb_015909_010 Hb_000000_240 Hb_000000_240 Hb_001100_030--Hb_000000_240 Hb_000051_030 Hb_000051_030 Hb_001100_030--Hb_000051_030 Hb_000836_610 Hb_000836_610 Hb_001100_030--Hb_000836_610 Hb_068492_010 Hb_068492_010 Hb_001100_030--Hb_068492_010 Hb_001842_060 Hb_001842_060 Hb_001100_030--Hb_001842_060 Hb_004286_030 Hb_004286_030 Hb_001100_030--Hb_004286_030 Hb_006919_010 Hb_006919_010 Hb_002376_030--Hb_006919_010 Hb_002374_110 Hb_002374_110 Hb_002376_030--Hb_002374_110 Hb_013652_010 Hb_013652_010 Hb_002376_030--Hb_013652_010 Hb_007483_030 Hb_007483_030 Hb_002376_030--Hb_007483_030 Hb_000407_110 Hb_000407_110 Hb_002376_030--Hb_000407_110 Hb_003581_240 Hb_003581_240 Hb_002376_030--Hb_003581_240 Hb_023774_010 Hb_023774_010 Hb_001652_050--Hb_023774_010 Hb_000613_270 Hb_000613_270 Hb_001652_050--Hb_000613_270 Hb_003086_180 Hb_003086_180 Hb_001652_050--Hb_003086_180 Hb_047923_010 Hb_047923_010 Hb_001652_050--Hb_047923_010 Hb_002157_180 Hb_002157_180 Hb_001652_050--Hb_002157_180 Hb_008111_020 Hb_008111_020 Hb_001652_050--Hb_008111_020 Hb_003071_060 Hb_003071_060 Hb_005288_040--Hb_003071_060 Hb_000025_020 Hb_000025_020 Hb_005288_040--Hb_000025_020 Hb_000220_160 Hb_000220_160 Hb_005288_040--Hb_000220_160 Hb_006478_180 Hb_006478_180 Hb_005288_040--Hb_006478_180 Hb_132880_030 Hb_132880_030 Hb_005288_040--Hb_132880_030 Hb_002325_020 Hb_002325_020 Hb_005288_040--Hb_002325_020 Hb_000597_110 Hb_000597_110 Hb_032631_010--Hb_000597_110 Hb_032631_010--Hb_000220_160 Hb_032631_010--Hb_132880_030 Hb_001856_090 Hb_001856_090 Hb_032631_010--Hb_001856_090 Hb_001951_090 Hb_001951_090 Hb_032631_010--Hb_001951_090 Hb_006452_050 Hb_006452_050 Hb_032631_010--Hb_006452_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00840983 0.0277316 0.0197009 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0150249 0 0.0656665 0

CAGE analysis