Hb_002097_060

Information

Type -
Description -
Location Contig2097: 161688-169438
Sequence    

Annotation

kegg
ID rcu:RCOM_0642610
description structural constituent of ribosome, putative
nr
ID XP_012086528.1
description PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
swissprot
ID B5YIM4
description 50S ribosomal protein L9 OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=rplI PE=3 SV=1
trembl
ID A0A067JP43
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24007 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21682: 161735-169365
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002097_060 0.0 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
2 Hb_003376_030 0.0538528878 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
3 Hb_000069_100 0.0555157481 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003455_040 0.0662502824 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
5 Hb_006573_220 0.0663610372 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
6 Hb_001575_020 0.0682936354 - - conserved hypothetical protein [Ricinus communis]
7 Hb_148200_010 0.0683307667 - - hypothetical protein 33 [Hevea brasiliensis]
8 Hb_003053_030 0.0686884771 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
9 Hb_007382_150 0.0715595943 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
10 Hb_001160_030 0.0740937699 transcription factor TF Family: Alfin-like hypothetical protein POPTR_0018s05470g [Populus trichocarpa]
11 Hb_001616_060 0.0747213939 - - PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]
12 Hb_000329_330 0.0752231628 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
13 Hb_001687_040 0.0762163758 - - actin-depolymerizing factor [Hevea brasiliensis]
14 Hb_003579_030 0.076294785 - - phosphatase 2C family protein [Populus trichocarpa]
15 Hb_001191_090 0.07671352 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
16 Hb_005731_170 0.0776079853 - - hypothetical protein PRUPE_ppa011750mg [Prunus persica]
17 Hb_002027_210 0.0791265912 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
18 Hb_003994_040 0.0795685746 - - -
19 Hb_000181_300 0.0797968485 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
20 Hb_003938_180 0.0853050279 - - lesion inducing family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_002097_060 Hb_002097_060 Hb_003376_030 Hb_003376_030 Hb_002097_060--Hb_003376_030 Hb_000069_100 Hb_000069_100 Hb_002097_060--Hb_000069_100 Hb_003455_040 Hb_003455_040 Hb_002097_060--Hb_003455_040 Hb_006573_220 Hb_006573_220 Hb_002097_060--Hb_006573_220 Hb_001575_020 Hb_001575_020 Hb_002097_060--Hb_001575_020 Hb_148200_010 Hb_148200_010 Hb_002097_060--Hb_148200_010 Hb_003376_030--Hb_003455_040 Hb_003376_030--Hb_148200_010 Hb_000146_020 Hb_000146_020 Hb_003376_030--Hb_000146_020 Hb_001160_030 Hb_001160_030 Hb_003376_030--Hb_001160_030 Hb_002027_210 Hb_002027_210 Hb_003376_030--Hb_002027_210 Hb_006831_030 Hb_006831_030 Hb_000069_100--Hb_006831_030 Hb_000329_330 Hb_000329_330 Hb_000069_100--Hb_000329_330 Hb_001616_060 Hb_001616_060 Hb_000069_100--Hb_001616_060 Hb_000212_260 Hb_000212_260 Hb_000069_100--Hb_000212_260 Hb_000069_100--Hb_006573_220 Hb_003994_040 Hb_003994_040 Hb_003455_040--Hb_003994_040 Hb_000173_220 Hb_000173_220 Hb_003455_040--Hb_000173_220 Hb_012753_160 Hb_012753_160 Hb_003455_040--Hb_012753_160 Hb_003455_040--Hb_002027_210 Hb_001191_090 Hb_001191_090 Hb_006573_220--Hb_001191_090 Hb_006573_220--Hb_000329_330 Hb_001687_040 Hb_001687_040 Hb_006573_220--Hb_001687_040 Hb_006573_220--Hb_003376_030 Hb_007382_150 Hb_007382_150 Hb_006573_220--Hb_007382_150 Hb_001575_020--Hb_001616_060 Hb_003929_120 Hb_003929_120 Hb_001575_020--Hb_003929_120 Hb_001575_020--Hb_000069_100 Hb_000061_300 Hb_000061_300 Hb_001575_020--Hb_000061_300 Hb_001575_020--Hb_001160_030 Hb_148200_010--Hb_001191_090 Hb_003053_030 Hb_003053_030 Hb_148200_010--Hb_003053_030 Hb_001433_050 Hb_001433_050 Hb_148200_010--Hb_001433_050 Hb_004156_040 Hb_004156_040 Hb_148200_010--Hb_004156_040 Hb_001279_360 Hb_001279_360 Hb_148200_010--Hb_001279_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.5549 11.9247 13.1859 17.6575 19.4932 39.1243
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
84.2394 108.888 78.8218 21.6901 15.4068

CAGE analysis