Hb_002097_090

Information

Type -
Description -
Location Contig2097: 189243-192386
Sequence    

Annotation

kegg
ID rcu:RCOM_1353370
description Splicing factor 3A subunit, putative
nr
ID XP_002519451.1
description Splicing factor 3A subunit, putative [Ricinus communis]
swissprot
ID Q54B65
description Splicing factor 3A subunit 2 OS=Dictyostelium discoideum GN=sf3a2 PE=3 SV=1
trembl
ID B9S0D2
description Splicing factor 3A subunit, putative OS=Ricinus communis GN=RCOM_1353370 PE=4 SV=1
Gene Ontology
ID GO:0005634
description splicing factor 3a subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21684: 189251-192416
cDNA
(Sanger)
(ID:Location)		 018_L12.ab1: 189790-192416

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002097_090 0.0 - - Splicing factor 3A subunit, putative [Ricinus communis]
2 Hb_000684_420 0.0519451361 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
3 Hb_000645_150 0.0521662047 - - zinc finger protein, putative [Ricinus communis]
4 Hb_004934_090 0.0559482371 - - hypothetical protein JCGZ_08073 [Jatropha curcas]
5 Hb_000076_080 0.0562243206 - - PREDICTED: protein MOS2 [Jatropha curcas]
6 Hb_009620_040 0.0567765682 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
7 Hb_000803_300 0.0568956652 - - nuclear movement protein nudc, putative [Ricinus communis]
8 Hb_002400_180 0.0583593334 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000236_370 0.0599345127 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
10 Hb_003581_120 0.0622954672 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
11 Hb_000956_030 0.0632210696 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
12 Hb_000522_090 0.0653394951 - - PREDICTED: actin-related protein 9 isoform X1 [Nicotiana tomentosiformis]
13 Hb_000186_280 0.0669058348 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
14 Hb_001829_010 0.0670080638 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]
15 Hb_000703_080 0.0670525811 - - guanine nucleotide exchange factor P532, putative [Ricinus communis]
16 Hb_006913_040 0.0698472178 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
17 Hb_026099_010 0.0704638077 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
18 Hb_012305_070 0.0716534003 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001019_170 0.0731315331 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
20 Hb_000284_210 0.0742602082 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002097_090 Hb_002097_090 Hb_000684_420 Hb_000684_420 Hb_002097_090--Hb_000684_420 Hb_000645_150 Hb_000645_150 Hb_002097_090--Hb_000645_150 Hb_004934_090 Hb_004934_090 Hb_002097_090--Hb_004934_090 Hb_000076_080 Hb_000076_080 Hb_002097_090--Hb_000076_080 Hb_009620_040 Hb_009620_040 Hb_002097_090--Hb_009620_040 Hb_000803_300 Hb_000803_300 Hb_002097_090--Hb_000803_300 Hb_000684_420--Hb_000076_080 Hb_000186_280 Hb_000186_280 Hb_000684_420--Hb_000186_280 Hb_002400_180 Hb_002400_180 Hb_000684_420--Hb_002400_180 Hb_004724_360 Hb_004724_360 Hb_000684_420--Hb_004724_360 Hb_073171_080 Hb_073171_080 Hb_000684_420--Hb_073171_080 Hb_000236_370 Hb_000236_370 Hb_000645_150--Hb_000236_370 Hb_006913_040 Hb_006913_040 Hb_000645_150--Hb_006913_040 Hb_012305_070 Hb_012305_070 Hb_000645_150--Hb_012305_070 Hb_000645_150--Hb_000186_280 Hb_001829_010 Hb_001829_010 Hb_000645_150--Hb_001829_010 Hb_004096_030 Hb_004096_030 Hb_004934_090--Hb_004096_030 Hb_005245_130 Hb_005245_130 Hb_004934_090--Hb_005245_130 Hb_002030_030 Hb_002030_030 Hb_004934_090--Hb_002030_030 Hb_004934_090--Hb_000803_300 Hb_003994_240 Hb_003994_240 Hb_004934_090--Hb_003994_240 Hb_001504_160 Hb_001504_160 Hb_000076_080--Hb_001504_160 Hb_000076_080--Hb_004724_360 Hb_000076_080--Hb_002400_180 Hb_000076_080--Hb_000186_280 Hb_000160_040 Hb_000160_040 Hb_009620_040--Hb_000160_040 Hb_009620_040--Hb_000236_370 Hb_009620_040--Hb_004934_090 Hb_000173_510 Hb_000173_510 Hb_009620_040--Hb_000173_510 Hb_009620_040--Hb_000645_150 Hb_000803_300--Hb_002400_180 Hb_000522_090 Hb_000522_090 Hb_000803_300--Hb_000522_090 Hb_000803_300--Hb_005245_130 Hb_009265_080 Hb_009265_080 Hb_000803_300--Hb_009265_080 Hb_000139_250 Hb_000139_250 Hb_000803_300--Hb_000139_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
134.128 70.3495 29.598 33.3444 153.075 188.908
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
105.88 79.4897 63.466 60.2639 39.8694

CAGE analysis