Hb_002097_140

Information

Type -
Description -
Location Contig2097: 233747-236564
Sequence    

Annotation

kegg
ID rcu:RCOM_1353430
description zinc finger protein, putative
nr
ID ABB47749.2
description CHY zinc finger family protein, expressed [Oryza sativa Japonica Group]
swissprot
ID -
description -
trembl
ID W5A0Z7
description Uncharacterized protein (Fragment) OS=Triticum aestivum PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring finger and chy zinc finger domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21694: 234068-234363 , PASA_asmbl_21695: 236049-236522 , PASA_asmbl_21696: 236089-236480
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002097_140 0.0 - - CHY zinc finger family protein, expressed [Oryza sativa Japonica Group]
2 Hb_001898_140 0.1467731055 - - hypothetical protein AMTR_s00071p00184460 [Amborella trichopoda]
3 Hb_005813_010 0.1491256765 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
4 Hb_001922_030 0.1684034381 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
5 Hb_000811_080 0.1706437557 - - conserved hypothetical protein [Ricinus communis]
6 Hb_031089_020 0.1790586434 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
7 Hb_080477_080 0.1800969715 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 isoform X1 [Gossypium raimondii]
8 Hb_002686_260 0.1822474025 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
9 Hb_003470_110 0.1853737572 - - unnamed protein product [Vitis vinifera]
10 Hb_001148_100 0.1855981565 - - -
11 Hb_005408_070 0.1856663041 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP4 [Jatropha curcas]
12 Hb_000216_050 0.1863001836 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]
13 Hb_122940_010 0.187172642 - - PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Populus euphratica]
14 Hb_004324_030 0.1875977161 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
15 Hb_001054_090 0.1906203055 - - Potassium channel SKOR, putative [Ricinus communis]
16 Hb_001493_090 0.191574716 - - conserved hypothetical protein [Ricinus communis]
17 Hb_042509_020 0.1939805035 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
18 Hb_000002_360 0.1952379643 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
19 Hb_002200_070 0.1957882904 - - PREDICTED: endoglucanase 9-like [Populus euphratica]
20 Hb_000181_210 0.1984302459 - - Phytosulfokine receptor precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002097_140 Hb_002097_140 Hb_001898_140 Hb_001898_140 Hb_002097_140--Hb_001898_140 Hb_005813_010 Hb_005813_010 Hb_002097_140--Hb_005813_010 Hb_001922_030 Hb_001922_030 Hb_002097_140--Hb_001922_030 Hb_000811_080 Hb_000811_080 Hb_002097_140--Hb_000811_080 Hb_031089_020 Hb_031089_020 Hb_002097_140--Hb_031089_020 Hb_080477_080 Hb_080477_080 Hb_002097_140--Hb_080477_080 Hb_000975_200 Hb_000975_200 Hb_001898_140--Hb_000975_200 Hb_001898_140--Hb_031089_020 Hb_001898_140--Hb_080477_080 Hb_005784_060 Hb_005784_060 Hb_001898_140--Hb_005784_060 Hb_122940_010 Hb_122940_010 Hb_001898_140--Hb_122940_010 Hb_007138_030 Hb_007138_030 Hb_005813_010--Hb_007138_030 Hb_000110_380 Hb_000110_380 Hb_005813_010--Hb_000110_380 Hb_005813_010--Hb_122940_010 Hb_005408_070 Hb_005408_070 Hb_005813_010--Hb_005408_070 Hb_000567_180 Hb_000567_180 Hb_005813_010--Hb_000567_180 Hb_001922_030--Hb_031089_020 Hb_000920_160 Hb_000920_160 Hb_001922_030--Hb_000920_160 Hb_001329_180 Hb_001329_180 Hb_001922_030--Hb_001329_180 Hb_000120_940 Hb_000120_940 Hb_001922_030--Hb_000120_940 Hb_026527_010 Hb_026527_010 Hb_001922_030--Hb_026527_010 Hb_000463_120 Hb_000463_120 Hb_001922_030--Hb_000463_120 Hb_001159_170 Hb_001159_170 Hb_000811_080--Hb_001159_170 Hb_004324_030 Hb_004324_030 Hb_000811_080--Hb_004324_030 Hb_000186_290 Hb_000186_290 Hb_000811_080--Hb_000186_290 Hb_042509_020 Hb_042509_020 Hb_000811_080--Hb_042509_020 Hb_009545_030 Hb_009545_030 Hb_000811_080--Hb_009545_030 Hb_003470_110 Hb_003470_110 Hb_031089_020--Hb_003470_110 Hb_084147_010 Hb_084147_010 Hb_031089_020--Hb_084147_010 Hb_004241_110 Hb_004241_110 Hb_031089_020--Hb_004241_110 Hb_002200_070 Hb_002200_070 Hb_031089_020--Hb_002200_070 Hb_030565_100 Hb_030565_100 Hb_031089_020--Hb_030565_100 Hb_003710_020 Hb_003710_020 Hb_080477_080--Hb_003710_020 Hb_158092_040 Hb_158092_040 Hb_080477_080--Hb_158092_040 Hb_004522_030 Hb_004522_030 Hb_080477_080--Hb_004522_030 Hb_143766_080 Hb_143766_080 Hb_080477_080--Hb_143766_080 Hb_001054_090 Hb_001054_090 Hb_080477_080--Hb_001054_090 Hb_000062_530 Hb_000062_530 Hb_080477_080--Hb_000062_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0618934 0.529221 0.302916 2.23585 0.0413853 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.377658 0.185651 0.0685919 0.879802 0.457563

CAGE analysis