Hb_002097_200

Information

Type -
Description -
Location Contig2097: 266992-279120
Sequence    

Annotation

kegg
ID rcu:RCOM_1353690
description protein phosphatase 2a, regulatory subunit, putative
nr
ID XP_002519463.1
description protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
swissprot
ID O04375
description Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform OS=Arabidopsis thaliana GN=B'ALPHA PE=1 SV=1
trembl
ID B9S0E4
description Protein phosphatase 2a, regulatory subunit, putative OS=Ricinus communis GN=RCOM_1353690 PE=4 SV=1
Gene Ontology
ID GO:0000159
description serine threonine protein phosphatase 2a 57 kda regulatory subunit b beta isoform

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21699: 267749-273861 , PASA_asmbl_21702: 275070-279000
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002097_200 0.0 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
2 Hb_189208_020 0.1092271998 - - LRX2, putative [Ricinus communis]
3 Hb_088753_010 0.1161764011 - - PREDICTED: copper amine oxidase 1-like [Vitis vinifera]
4 Hb_000987_060 0.1167321703 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
5 Hb_010381_030 0.1179203893 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
6 Hb_008511_100 0.1205509662 - - hypothetical protein POPTR_0009s11860g [Populus trichocarpa]
7 Hb_003752_100 0.1213952198 - - PREDICTED: FRIGIDA-like protein 3 [Jatropha curcas]
8 Hb_006788_140 0.1233797915 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
9 Hb_005207_050 0.1244801047 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 39 [Jatropha curcas]
10 Hb_028487_020 0.1253917437 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
11 Hb_000953_050 0.1264346498 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
12 Hb_012573_040 0.1279789276 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
13 Hb_003929_130 0.1304440149 - - PREDICTED: uncharacterized protein LOC105643628 [Jatropha curcas]
14 Hb_005725_210 0.1316801521 - - PREDICTED: RNA-binding protein 1 [Jatropha curcas]
15 Hb_002572_050 0.1323015238 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
16 Hb_009627_030 0.1332858395 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
17 Hb_003175_030 0.1334653591 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
18 Hb_008770_030 0.1342290927 - - PREDICTED: MACPF domain-containing protein At4g24290-like [Jatropha curcas]
19 Hb_010921_030 0.1345612146 transcription factor TF Family: PHD PREDICTED: PHD finger protein At2g01810 [Jatropha curcas]
20 Hb_000009_180 0.1351220922 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase RecName: Full=Geranylgeranyl pyrophosphate synthase, chloroplastic; Short=GGPP synthase; Short=GGPS; AltName: Full=(2E,6E)-farnesyl diphosphate synthase; AltName: Full=Dimethylallyltranstransferase; AltName: Full=Farnesyl diphosphate synthase; AltName: Full=Farnesyltranstransferase; AltName: Full=Geranyltranstransferase; Flags: Precursor [Hevea brasiliensis]

Gene co-expression network

sample Hb_002097_200 Hb_002097_200 Hb_189208_020 Hb_189208_020 Hb_002097_200--Hb_189208_020 Hb_088753_010 Hb_088753_010 Hb_002097_200--Hb_088753_010 Hb_000987_060 Hb_000987_060 Hb_002097_200--Hb_000987_060 Hb_010381_030 Hb_010381_030 Hb_002097_200--Hb_010381_030 Hb_008511_100 Hb_008511_100 Hb_002097_200--Hb_008511_100 Hb_003752_100 Hb_003752_100 Hb_002097_200--Hb_003752_100 Hb_001894_050 Hb_001894_050 Hb_189208_020--Hb_001894_050 Hb_003175_030 Hb_003175_030 Hb_189208_020--Hb_003175_030 Hb_005725_210 Hb_005725_210 Hb_189208_020--Hb_005725_210 Hb_006788_140 Hb_006788_140 Hb_189208_020--Hb_006788_140 Hb_001564_080 Hb_001564_080 Hb_189208_020--Hb_001564_080 Hb_000402_210 Hb_000402_210 Hb_088753_010--Hb_000402_210 Hb_000451_070 Hb_000451_070 Hb_088753_010--Hb_000451_070 Hb_088753_010--Hb_189208_020 Hb_088753_010--Hb_006788_140 Hb_000302_260 Hb_000302_260 Hb_088753_010--Hb_000302_260 Hb_001856_200 Hb_001856_200 Hb_000987_060--Hb_001856_200 Hb_000732_250 Hb_000732_250 Hb_000987_060--Hb_000732_250 Hb_000987_060--Hb_006788_140 Hb_007943_050 Hb_007943_050 Hb_000987_060--Hb_007943_050 Hb_006909_060 Hb_006909_060 Hb_000987_060--Hb_006909_060 Hb_005207_050 Hb_005207_050 Hb_010381_030--Hb_005207_050 Hb_010381_030--Hb_003175_030 Hb_006922_010 Hb_006922_010 Hb_010381_030--Hb_006922_010 Hb_005389_160 Hb_005389_160 Hb_010381_030--Hb_005389_160 Hb_033772_030 Hb_033772_030 Hb_010381_030--Hb_033772_030 Hb_000363_400 Hb_000363_400 Hb_010381_030--Hb_000363_400 Hb_000953_050 Hb_000953_050 Hb_008511_100--Hb_000953_050 Hb_001288_070 Hb_001288_070 Hb_008511_100--Hb_001288_070 Hb_002572_050 Hb_002572_050 Hb_008511_100--Hb_002572_050 Hb_005496_180 Hb_005496_180 Hb_008511_100--Hb_005496_180 Hb_008511_100--Hb_189208_020 Hb_003082_010 Hb_003082_010 Hb_003752_100--Hb_003082_010 Hb_004109_030 Hb_004109_030 Hb_003752_100--Hb_004109_030 Hb_001864_060 Hb_001864_060 Hb_003752_100--Hb_001864_060 Hb_003752_100--Hb_003175_030 Hb_001828_130 Hb_001828_130 Hb_003752_100--Hb_001828_130 Hb_012055_060 Hb_012055_060 Hb_003752_100--Hb_012055_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.09732 35.495 6.74565 10.7186 7.59631 8.80423
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.21694 19.8304 13.8143 13.5897 6.20397

CAGE analysis