Hb_002097_210

Information

Type -
Description -
Location Contig2097: 282892-294609
Sequence    

Annotation

kegg
ID rcu:RCOM_1353710
description hypothetical protein
nr
ID XP_002519465.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4I9E1
description Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana GN=NFD4 PE=3 SV=1
trembl
ID B9S0E6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1353710 PE=4 SV=1
Gene Ontology
ID GO:0005737
description major facilitator superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21703: 282650-284940
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002097_210 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_027474_010 0.0770374625 - - PREDICTED: uncharacterized protein LOC105629982 [Jatropha curcas]
3 Hb_008550_030 0.0881339165 - - PREDICTED: tonoplast dicarboxylate transporter [Jatropha curcas]
4 Hb_145139_010 0.0900934393 - - PREDICTED: sugar transporter ERD6-like 5 isoform X1 [Vitis vinifera]
5 Hb_001677_120 0.1002966293 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
6 Hb_002239_020 0.1034563226 - - MLO, putative [Theobroma cacao]
7 Hb_002475_010 0.1090196168 - - hypothetical protein JCGZ_22530 [Jatropha curcas]
8 Hb_123078_010 0.1100247629 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
9 Hb_007007_090 0.1108989052 - - phospholipase d beta, putative [Ricinus communis]
10 Hb_008040_060 0.1175578499 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
11 Hb_009247_030 0.1215115718 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
12 Hb_004122_020 0.1218613319 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
13 Hb_001248_170 0.123978462 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
14 Hb_001534_150 0.1244022314 - - PREDICTED: uncharacterized permease C29B12.14c [Jatropha curcas]
15 Hb_000072_160 0.1265993722 - - proline oxidase [Manihot esculenta]
16 Hb_030370_070 0.128200466 - - ATP binding protein, putative [Ricinus communis]
17 Hb_000976_340 0.1300586818 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
18 Hb_001989_080 0.1318182494 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_004945_050 0.1319880523 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
20 Hb_014361_130 0.1332740519 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]

Gene co-expression network

sample Hb_002097_210 Hb_002097_210 Hb_027474_010 Hb_027474_010 Hb_002097_210--Hb_027474_010 Hb_008550_030 Hb_008550_030 Hb_002097_210--Hb_008550_030 Hb_145139_010 Hb_145139_010 Hb_002097_210--Hb_145139_010 Hb_001677_120 Hb_001677_120 Hb_002097_210--Hb_001677_120 Hb_002239_020 Hb_002239_020 Hb_002097_210--Hb_002239_020 Hb_002475_010 Hb_002475_010 Hb_002097_210--Hb_002475_010 Hb_123078_010 Hb_123078_010 Hb_027474_010--Hb_123078_010 Hb_001989_080 Hb_001989_080 Hb_027474_010--Hb_001989_080 Hb_000041_160 Hb_000041_160 Hb_027474_010--Hb_000041_160 Hb_105814_020 Hb_105814_020 Hb_027474_010--Hb_105814_020 Hb_001046_040 Hb_001046_040 Hb_027474_010--Hb_001046_040 Hb_004945_050 Hb_004945_050 Hb_008550_030--Hb_004945_050 Hb_002267_030 Hb_002267_030 Hb_008550_030--Hb_002267_030 Hb_002341_040 Hb_002341_040 Hb_008550_030--Hb_002341_040 Hb_030370_070 Hb_030370_070 Hb_008550_030--Hb_030370_070 Hb_000060_100 Hb_000060_100 Hb_008550_030--Hb_000060_100 Hb_002968_010 Hb_002968_010 Hb_145139_010--Hb_002968_010 Hb_000072_160 Hb_000072_160 Hb_145139_010--Hb_000072_160 Hb_000656_370 Hb_000656_370 Hb_145139_010--Hb_000656_370 Hb_002272_070 Hb_002272_070 Hb_145139_010--Hb_002272_070 Hb_145139_010--Hb_002475_010 Hb_002375_080 Hb_002375_080 Hb_001677_120--Hb_002375_080 Hb_001821_050 Hb_001821_050 Hb_001677_120--Hb_001821_050 Hb_007007_090 Hb_007007_090 Hb_001677_120--Hb_007007_090 Hb_006573_280 Hb_006573_280 Hb_001677_120--Hb_006573_280 Hb_004724_300 Hb_004724_300 Hb_001677_120--Hb_004724_300 Hb_001677_120--Hb_004945_050 Hb_010921_060 Hb_010921_060 Hb_002239_020--Hb_010921_060 Hb_009247_030 Hb_009247_030 Hb_002239_020--Hb_009247_030 Hb_007237_090 Hb_007237_090 Hb_002239_020--Hb_007237_090 Hb_000465_380 Hb_000465_380 Hb_002239_020--Hb_000465_380 Hb_008040_060 Hb_008040_060 Hb_002239_020--Hb_008040_060 Hb_004122_020 Hb_004122_020 Hb_002475_010--Hb_004122_020 Hb_002475_010--Hb_002968_010 Hb_006052_040 Hb_006052_040 Hb_002475_010--Hb_006052_040 Hb_002475_010--Hb_000656_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00520352 46.43 6.84534 17.743 0.00486902 0.0236044
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 6.77199 13.2078

CAGE analysis