Hb_002099_050

Information

Type -
Description -
Location Contig2099: 46386-48511
Sequence    

Annotation

kegg
ID rcu:RCOM_1456130
description hypothetical protein
nr
ID XP_002530877.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SY08
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1456130 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002099_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011671_400 0.1497986933 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
3 Hb_008864_060 0.1560721048 - - PREDICTED: uncharacterized protein LOC105634361 [Jatropha curcas]
4 Hb_000250_010 0.1703945817 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
5 Hb_001892_120 0.1735999922 - - PREDICTED: MLP-like protein 328 [Jatropha curcas]
6 Hb_002260_090 0.1896321674 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
7 Hb_003052_040 0.1922683408 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000617_290 0.193193579 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001671_060 0.1977940482 - - fad NAD binding oxidoreductases, putative [Ricinus communis]
10 Hb_048937_030 0.2011296778 - - hypothetical protein RCOM_0231790 [Ricinus communis]
11 Hb_001157_220 0.2016246651 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002820_140 0.2020576935 - - PREDICTED: uncharacterized protein LOC105638912 [Jatropha curcas]
13 Hb_027346_020 0.207650155 - - -
14 Hb_000699_120 0.211614159 - - DNA-binding family protein [Populus trichocarpa]
15 Hb_001276_060 0.2124681202 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
16 Hb_000614_100 0.2136101603 - - 3-oxoacyl-[acyl-carrier-protein] reductase [Populus trichocarpa]
17 Hb_000714_010 0.2191348655 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
18 Hb_003095_070 0.2231887376 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
19 Hb_003211_050 0.2260019196 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
20 Hb_078633_010 0.2281264267 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002099_050 Hb_002099_050 Hb_011671_400 Hb_011671_400 Hb_002099_050--Hb_011671_400 Hb_008864_060 Hb_008864_060 Hb_002099_050--Hb_008864_060 Hb_000250_010 Hb_000250_010 Hb_002099_050--Hb_000250_010 Hb_001892_120 Hb_001892_120 Hb_002099_050--Hb_001892_120 Hb_002260_090 Hb_002260_090 Hb_002099_050--Hb_002260_090 Hb_003052_040 Hb_003052_040 Hb_002099_050--Hb_003052_040 Hb_001276_060 Hb_001276_060 Hb_011671_400--Hb_001276_060 Hb_078633_010 Hb_078633_010 Hb_011671_400--Hb_078633_010 Hb_011671_400--Hb_002260_090 Hb_003095_070 Hb_003095_070 Hb_011671_400--Hb_003095_070 Hb_011671_400--Hb_003052_040 Hb_005000_160 Hb_005000_160 Hb_011671_400--Hb_005000_160 Hb_008864_060--Hb_000250_010 Hb_001959_260 Hb_001959_260 Hb_008864_060--Hb_001959_260 Hb_008864_060--Hb_011671_400 Hb_008864_060--Hb_001276_060 Hb_003211_050 Hb_003211_050 Hb_008864_060--Hb_003211_050 Hb_000714_010 Hb_000714_010 Hb_000250_010--Hb_000714_010 Hb_001671_060 Hb_001671_060 Hb_000250_010--Hb_001671_060 Hb_000250_010--Hb_011671_400 Hb_000250_010--Hb_001959_260 Hb_003050_070 Hb_003050_070 Hb_000250_010--Hb_003050_070 Hb_002820_140 Hb_002820_140 Hb_001892_120--Hb_002820_140 Hb_001279_130 Hb_001279_130 Hb_001892_120--Hb_001279_130 Hb_000699_120 Hb_000699_120 Hb_001892_120--Hb_000699_120 Hb_000638_020 Hb_000638_020 Hb_001892_120--Hb_000638_020 Hb_001892_120--Hb_002260_090 Hb_014497_110 Hb_014497_110 Hb_002260_090--Hb_014497_110 Hb_001213_120 Hb_001213_120 Hb_002260_090--Hb_001213_120 Hb_002260_090--Hb_003052_040 Hb_012366_020 Hb_012366_020 Hb_002260_090--Hb_012366_020 Hb_005908_040 Hb_005908_040 Hb_002260_090--Hb_005908_040 Hb_001396_190 Hb_001396_190 Hb_003052_040--Hb_001396_190 Hb_005914_070 Hb_005914_070 Hb_003052_040--Hb_005914_070 Hb_003052_040--Hb_078633_010 Hb_003052_040--Hb_014497_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.446031 0 0 0 0.116352 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.861763 0.903093 0.926134 0.0307991 0

CAGE analysis