Hb_002099_060

Information

Type -
Description -
Location Contig2099: 55513-63491
Sequence    

Annotation

kegg
ID rcu:RCOM_0878040
description Protein AFR, putative
nr
ID XP_002527061.1
description Protein AFR, putative [Ricinus communis]
swissprot
ID Q93W93
description F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1
trembl
ID B9SM42
description Protein AFR, putative OS=Ricinus communis GN=RCOM_0878040 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21706: 55257-60452
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002099_060 0.0 - - Protein AFR, putative [Ricinus communis]
2 Hb_000438_020 0.0916270346 - - leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]
3 Hb_029748_020 0.1032284088 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_005724_040 0.105763496 - - hypothetical protein JCGZ_13142 [Jatropha curcas]
5 Hb_004864_020 0.1107959129 - - Polyprotein, putative [Solanum demissum]
6 Hb_000181_230 0.1131586378 - - copper ion binding protein, putative [Ricinus communis]
7 Hb_000418_150 0.1167457237 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_002740_100 0.1187041373 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
9 Hb_000251_050 0.1275788129 - - hypothetical protein JCGZ_21678 [Jatropha curcas]
10 Hb_002110_090 0.132041906 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
11 Hb_000714_120 0.1337440948 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
12 Hb_003177_090 0.1377550207 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
13 Hb_000107_550 0.1402819993 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
14 Hb_003687_010 0.1404835178 - - Cysteine-rich RLK 29, putative [Theobroma cacao]
15 Hb_025045_010 0.1406054403 - - catalytic, putative [Ricinus communis]
16 Hb_002686_210 0.1410259029 - - zinc finger protein, putative [Ricinus communis]
17 Hb_005288_210 0.1424331803 - - hypothetical protein VITISV_017217 [Vitis vinifera]
18 Hb_155150_010 0.1470692426 - - kinase, putative [Ricinus communis]
19 Hb_002685_220 0.150326499 - - PREDICTED: cationic amino acid transporter 4, vacuolar-like isoform X1 [Jatropha curcas]
20 Hb_001269_520 0.150978448 - - PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]

Gene co-expression network

sample Hb_002099_060 Hb_002099_060 Hb_000438_020 Hb_000438_020 Hb_002099_060--Hb_000438_020 Hb_029748_020 Hb_029748_020 Hb_002099_060--Hb_029748_020 Hb_005724_040 Hb_005724_040 Hb_002099_060--Hb_005724_040 Hb_004864_020 Hb_004864_020 Hb_002099_060--Hb_004864_020 Hb_000181_230 Hb_000181_230 Hb_002099_060--Hb_000181_230 Hb_000418_150 Hb_000418_150 Hb_002099_060--Hb_000418_150 Hb_000438_020--Hb_000418_150 Hb_000438_020--Hb_029748_020 Hb_003177_090 Hb_003177_090 Hb_000438_020--Hb_003177_090 Hb_001307_200 Hb_001307_200 Hb_000438_020--Hb_001307_200 Hb_001689_030 Hb_001689_030 Hb_000438_020--Hb_001689_030 Hb_000100_210 Hb_000100_210 Hb_029748_020--Hb_000100_210 Hb_000321_120 Hb_000321_120 Hb_029748_020--Hb_000321_120 Hb_001522_040 Hb_001522_040 Hb_029748_020--Hb_001522_040 Hb_155150_010 Hb_155150_010 Hb_029748_020--Hb_155150_010 Hb_005724_040--Hb_000181_230 Hb_002740_100 Hb_002740_100 Hb_005724_040--Hb_002740_100 Hb_001221_390 Hb_001221_390 Hb_005724_040--Hb_001221_390 Hb_007483_120 Hb_007483_120 Hb_005724_040--Hb_007483_120 Hb_002685_160 Hb_002685_160 Hb_005724_040--Hb_002685_160 Hb_000714_120 Hb_000714_120 Hb_004864_020--Hb_000714_120 Hb_004864_020--Hb_000418_150 Hb_004864_020--Hb_029748_020 Hb_000139_510 Hb_000139_510 Hb_004864_020--Hb_000139_510 Hb_004864_020--Hb_000438_020 Hb_000181_230--Hb_007483_120 Hb_000181_230--Hb_002740_100 Hb_002344_080 Hb_002344_080 Hb_000181_230--Hb_002344_080 Hb_000181_230--Hb_002685_160 Hb_000757_020 Hb_000757_020 Hb_000418_150--Hb_000757_020 Hb_000418_150--Hb_003177_090 Hb_001496_120 Hb_001496_120 Hb_000418_150--Hb_001496_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.467486 2.94428 2.06539 3.87205 0.51339 0.677913
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.164477 0.155274 0 2.25334 3.94459

CAGE analysis