Hb_002099_080

Information

Type -
Description -
Location Contig2099: 94722-107118
Sequence    

Annotation

kegg
ID rcu:RCOM_0878260
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_012085032.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
swissprot
ID Q84W89
description DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana GN=RH37 PE=2 SV=2
trembl
ID A0A067JSK3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21034 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 37-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21707: 94171-106990 , PASA_asmbl_21708: 94171-107058 , PASA_asmbl_21709: 94171-99198 , PASA_asmbl_21711: 98282-98589
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002099_080 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
2 Hb_007820_010 0.0613908931 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: protein FLOWERING LOCUS D [Jatropha curcas]
3 Hb_002055_040 0.0639706376 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
4 Hb_002667_050 0.0649629923 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
5 Hb_009296_040 0.0694282331 - - hypothetical protein L484_007435 [Morus notabilis]
6 Hb_002063_020 0.0730374591 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17140 [Jatropha curcas]
7 Hb_000388_090 0.0730379168 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
8 Hb_000366_040 0.0782358605 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
9 Hb_011228_010 0.0800849315 - - PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_000352_190 0.0863798791 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 41 [Jatropha curcas]
11 Hb_004679_030 0.0869853318 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
12 Hb_000941_150 0.0878130871 - - PREDICTED: uncharacterized protein LOC105637253 isoform X1 [Jatropha curcas]
13 Hb_004712_130 0.0898338498 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
14 Hb_000340_230 0.0906264545 - - synapse-associated protein, putative [Ricinus communis]
15 Hb_000028_390 0.0911282581 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
16 Hb_000922_030 0.0914542165 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
17 Hb_004020_020 0.0929841488 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g65820 [Jatropha curcas]
18 Hb_001157_240 0.0940523792 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
19 Hb_019337_020 0.0948347072 - - K+ uptake permease 11 isoform 1 [Theobroma cacao]
20 Hb_004374_110 0.0953566953 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]

Gene co-expression network

sample Hb_002099_080 Hb_002099_080 Hb_007820_010 Hb_007820_010 Hb_002099_080--Hb_007820_010 Hb_002055_040 Hb_002055_040 Hb_002099_080--Hb_002055_040 Hb_002667_050 Hb_002667_050 Hb_002099_080--Hb_002667_050 Hb_009296_040 Hb_009296_040 Hb_002099_080--Hb_009296_040 Hb_002063_020 Hb_002063_020 Hb_002099_080--Hb_002063_020 Hb_000388_090 Hb_000388_090 Hb_002099_080--Hb_000388_090 Hb_007820_010--Hb_002055_040 Hb_003032_020 Hb_003032_020 Hb_007820_010--Hb_003032_020 Hb_000366_040 Hb_000366_040 Hb_007820_010--Hb_000366_040 Hb_000204_120 Hb_000204_120 Hb_007820_010--Hb_000204_120 Hb_000352_190 Hb_000352_190 Hb_007820_010--Hb_000352_190 Hb_000365_240 Hb_000365_240 Hb_002055_040--Hb_000365_240 Hb_011228_010 Hb_011228_010 Hb_002055_040--Hb_011228_010 Hb_000039_150 Hb_000039_150 Hb_002055_040--Hb_000039_150 Hb_002055_040--Hb_000388_090 Hb_005901_020 Hb_005901_020 Hb_002667_050--Hb_005901_020 Hb_003294_090 Hb_003294_090 Hb_002667_050--Hb_003294_090 Hb_004020_020 Hb_004020_020 Hb_002667_050--Hb_004020_020 Hb_001449_040 Hb_001449_040 Hb_002667_050--Hb_001449_040 Hb_002667_050--Hb_000388_090 Hb_000140_210 Hb_000140_210 Hb_009296_040--Hb_000140_210 Hb_011016_050 Hb_011016_050 Hb_009296_040--Hb_011016_050 Hb_010142_020 Hb_010142_020 Hb_009296_040--Hb_010142_020 Hb_000028_390 Hb_000028_390 Hb_009296_040--Hb_000028_390 Hb_000537_050 Hb_000537_050 Hb_009296_040--Hb_000537_050 Hb_000614_240 Hb_000614_240 Hb_009296_040--Hb_000614_240 Hb_003253_040 Hb_003253_040 Hb_002063_020--Hb_003253_040 Hb_002063_020--Hb_000388_090 Hb_002063_020--Hb_000366_040 Hb_002942_100 Hb_002942_100 Hb_002063_020--Hb_002942_100 Hb_002063_020--Hb_000352_190 Hb_001357_020 Hb_001357_020 Hb_000388_090--Hb_001357_020 Hb_005736_020 Hb_005736_020 Hb_000388_090--Hb_005736_020 Hb_028912_050 Hb_028912_050 Hb_000388_090--Hb_028912_050 Hb_000388_090--Hb_000028_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.50042 7.3687 5.14103 10.4239 8.32133 10.0338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.07879 5.7496 14.8669 12.1233 15.9365

CAGE analysis