Hb_002105_040

Information

Type -
Description -
Location Contig2105: 27330-31234
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21769: 27331-31156
cDNA
(Sanger)
(ID:Location)		 005_B22.ab1: 28401-31115 , 019_I13.ab1: 28465-31115 , 022_O01.ab1: 28585-31151 , 040_B06.ab1: 28442-31156

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002105_040 0.0 - - -
2 Hb_000175_460 0.0583659643 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
3 Hb_005348_140 0.0618054378 - - PREDICTED: ubiquinone biosynthesis protein COQ9-B, mitochondrial [Jatropha curcas]
4 Hb_000510_320 0.0619826709 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
5 Hb_005663_060 0.0659954046 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
6 Hb_000876_070 0.0665566936 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
7 Hb_004724_080 0.069889814 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000512_060 0.0703412046 - - PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Jatropha curcas]
9 Hb_002739_100 0.0716057241 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
10 Hb_005618_170 0.0738551712 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
11 Hb_003092_040 0.0777124483 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
12 Hb_000409_020 0.0786953631 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
13 Hb_002518_140 0.0811009414 - - hypothetical protein JCGZ_18870 [Jatropha curcas]
14 Hb_002016_110 0.0813245268 - - transducin family protein [Populus trichocarpa]
15 Hb_004254_120 0.0830132893 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000035_320 0.083827908 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 [Jatropha curcas]
17 Hb_004738_100 0.0847300028 - - PREDICTED: 14-3-3-like protein D-like isoform X1 [Citrus sinensis]
18 Hb_000671_050 0.0850385742 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
19 Hb_000003_250 0.0852065095 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
20 Hb_003862_050 0.085502186 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105641042 [Jatropha curcas]

Gene co-expression network

sample Hb_002105_040 Hb_002105_040 Hb_000175_460 Hb_000175_460 Hb_002105_040--Hb_000175_460 Hb_005348_140 Hb_005348_140 Hb_002105_040--Hb_005348_140 Hb_000510_320 Hb_000510_320 Hb_002105_040--Hb_000510_320 Hb_005663_060 Hb_005663_060 Hb_002105_040--Hb_005663_060 Hb_000876_070 Hb_000876_070 Hb_002105_040--Hb_000876_070 Hb_004724_080 Hb_004724_080 Hb_002105_040--Hb_004724_080 Hb_003862_050 Hb_003862_050 Hb_000175_460--Hb_003862_050 Hb_000175_460--Hb_000510_320 Hb_032208_090 Hb_032208_090 Hb_000175_460--Hb_032208_090 Hb_003092_040 Hb_003092_040 Hb_000175_460--Hb_003092_040 Hb_000175_460--Hb_000876_070 Hb_001617_050 Hb_001617_050 Hb_005348_140--Hb_001617_050 Hb_001226_040 Hb_001226_040 Hb_005348_140--Hb_001226_040 Hb_005348_140--Hb_000175_460 Hb_005348_140--Hb_003862_050 Hb_000512_060 Hb_000512_060 Hb_005348_140--Hb_000512_060 Hb_000086_400 Hb_000086_400 Hb_000510_320--Hb_000086_400 Hb_004738_040 Hb_004738_040 Hb_000510_320--Hb_004738_040 Hb_000510_320--Hb_000876_070 Hb_181288_020 Hb_181288_020 Hb_000510_320--Hb_181288_020 Hb_005663_060--Hb_003092_040 Hb_032202_190 Hb_032202_190 Hb_005663_060--Hb_032202_190 Hb_006922_100 Hb_006922_100 Hb_005663_060--Hb_006922_100 Hb_007441_120 Hb_007441_120 Hb_005663_060--Hb_007441_120 Hb_002016_110 Hb_002016_110 Hb_005663_060--Hb_002016_110 Hb_000409_020 Hb_000409_020 Hb_005663_060--Hb_000409_020 Hb_002739_100 Hb_002739_100 Hb_000876_070--Hb_002739_100 Hb_005779_060 Hb_005779_060 Hb_000876_070--Hb_005779_060 Hb_002046_180 Hb_002046_180 Hb_000876_070--Hb_002046_180 Hb_000876_070--Hb_032202_190 Hb_007691_030 Hb_007691_030 Hb_000876_070--Hb_007691_030 Hb_005618_170 Hb_005618_170 Hb_000876_070--Hb_005618_170 Hb_000928_210 Hb_000928_210 Hb_004724_080--Hb_000928_210 Hb_004724_080--Hb_002739_100 Hb_017358_030 Hb_017358_030 Hb_004724_080--Hb_017358_030 Hb_004724_080--Hb_000876_070 Hb_000003_250 Hb_000003_250 Hb_004724_080--Hb_000003_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
74.332 34.3306 25.0711 44.1824 50.9437 54.1275
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.672 69.3812 92.4108 38.8344 31.6706

CAGE analysis