Hb_002105_090

Information

Type -
Description -
Location Contig2105: 75922-79267
Sequence    

Annotation

kegg
ID tcc:TCM_006131
description Ras-related small GTP-binding family protein
nr
ID AEA92308.1
description Rab4 [Hevea brasiliensis]
swissprot
ID Q9ZRE2
description Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1
trembl
ID F2VXU6
description Rab4 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein rabd1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21774: 75969-79216
cDNA
(Sanger)
(ID:Location)		 005_I19.ab1: 77718-78999 , 031_K04.ab1: 75969-79038 , 032_N10.ab1: 76017-79043 , 048_G19.ab1: 76006-79115

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002105_090 0.0 - - Rab4 [Hevea brasiliensis]
2 Hb_000494_020 0.0590303154 - - PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]
3 Hb_004324_310 0.0681341271 - - conserved hypothetical protein [Ricinus communis]
4 Hb_032717_080 0.0700699826 - - gamma-soluble nsf attachment protein, putative [Ricinus communis]
5 Hb_070986_010 0.0706503582 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
6 Hb_001184_090 0.0712411993 - - PREDICTED: TIP41-like protein [Jatropha curcas]
7 Hb_010407_040 0.072583251 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
8 Hb_000163_160 0.0730566072 - - Putative small nuclear ribonucleoprotein Sm D2 [Glycine soja]
9 Hb_000103_560 0.0731032416 - - ADP-ribosylation factor, putative [Ricinus communis]
10 Hb_002030_040 0.0746074947 - - hypothetical protein JCGZ_18677 [Jatropha curcas]
11 Hb_004204_120 0.0753712129 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
12 Hb_000007_100 0.0755309627 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
13 Hb_001246_090 0.0757784429 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
14 Hb_003878_010 0.0757994597 - - PREDICTED: uncharacterized protein LOC105632145 [Jatropha curcas]
15 Hb_001221_410 0.0778729265 - - PREDICTED: gamma carbonic anhydrase-like 2, mitochondrial [Jatropha curcas]
16 Hb_004800_230 0.0782598966 - - PREDICTED: MIP18 family protein At1g68310 [Jatropha curcas]
17 Hb_002078_150 0.0794012666 - - protein with unknown function [Ricinus communis]
18 Hb_128048_010 0.0801843291 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
19 Hb_011689_080 0.0814548246 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
20 Hb_125000_010 0.0814941073 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002105_090 Hb_002105_090 Hb_000494_020 Hb_000494_020 Hb_002105_090--Hb_000494_020 Hb_004324_310 Hb_004324_310 Hb_002105_090--Hb_004324_310 Hb_032717_080 Hb_032717_080 Hb_002105_090--Hb_032717_080 Hb_070986_010 Hb_070986_010 Hb_002105_090--Hb_070986_010 Hb_001184_090 Hb_001184_090 Hb_002105_090--Hb_001184_090 Hb_010407_040 Hb_010407_040 Hb_002105_090--Hb_010407_040 Hb_000494_020--Hb_010407_040 Hb_003363_110 Hb_003363_110 Hb_000494_020--Hb_003363_110 Hb_000933_180 Hb_000933_180 Hb_000494_020--Hb_000933_180 Hb_000163_160 Hb_000163_160 Hb_000494_020--Hb_000163_160 Hb_001246_090 Hb_001246_090 Hb_000494_020--Hb_001246_090 Hb_011689_080 Hb_011689_080 Hb_004324_310--Hb_011689_080 Hb_001195_690 Hb_001195_690 Hb_004324_310--Hb_001195_690 Hb_002078_150 Hb_002078_150 Hb_004324_310--Hb_002078_150 Hb_002774_060 Hb_002774_060 Hb_004324_310--Hb_002774_060 Hb_001377_290 Hb_001377_290 Hb_004324_310--Hb_001377_290 Hb_000103_090 Hb_000103_090 Hb_032717_080--Hb_000103_090 Hb_011310_190 Hb_011310_190 Hb_032717_080--Hb_011310_190 Hb_004048_070 Hb_004048_070 Hb_032717_080--Hb_004048_070 Hb_007254_040 Hb_007254_040 Hb_032717_080--Hb_007254_040 Hb_000613_140 Hb_000613_140 Hb_032717_080--Hb_000613_140 Hb_004204_120 Hb_004204_120 Hb_070986_010--Hb_004204_120 Hb_001584_070 Hb_001584_070 Hb_070986_010--Hb_001584_070 Hb_000798_030 Hb_000798_030 Hb_070986_010--Hb_000798_030 Hb_010883_150 Hb_010883_150 Hb_070986_010--Hb_010883_150 Hb_001257_080 Hb_001257_080 Hb_070986_010--Hb_001257_080 Hb_001184_090--Hb_000494_020 Hb_000000_170 Hb_000000_170 Hb_001184_090--Hb_000000_170 Hb_004800_230 Hb_004800_230 Hb_001184_090--Hb_004800_230 Hb_000832_140 Hb_000832_140 Hb_001184_090--Hb_000832_140 Hb_000454_050 Hb_000454_050 Hb_001184_090--Hb_000454_050 Hb_010407_040--Hb_000163_160 Hb_145880_030 Hb_145880_030 Hb_010407_040--Hb_145880_030 Hb_010407_040--Hb_003363_110 Hb_007778_030 Hb_007778_030 Hb_010407_040--Hb_007778_030 Hb_000000_160 Hb_000000_160 Hb_010407_040--Hb_000000_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
104.667 34.1018 45.4459 67.5697 101.974 110.42
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
155.917 148.984 72.5811 47.7045 22.7449

CAGE analysis