Hb_002105_100

Information

Type -
Description -
Location Contig2105: 80121-82928
Sequence    

Annotation

kegg
ID rcu:RCOM_0757660
description protein with unknown function (EC:3.1.4.12)
nr
ID XP_002526431.1
description protein with unknown function [Ricinus communis]
swissprot
ID O04486
description Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1
trembl
ID B9SKB2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0757660 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein raba2a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21776: 80168-82903 , PASA_asmbl_21778: 81418-81583
cDNA
(Sanger)
(ID:Location)		 011_G11.ab1: 80305-82903 , 023_N24.ab1: 80621-82869 , 046_E21.ab1: 80287-82903 , 049_J16.ab1: 80336-82903

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002105_100 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_000002_380 0.0590339923 - - PREDICTED: bet1-like SNARE 1-2 [Jatropha curcas]
3 Hb_154948_040 0.0697674534 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
4 Hb_000005_090 0.0728647065 - - hypothetical protein CICLE_v10029644mg [Citrus clementina]
5 Hb_000805_240 0.0803727912 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
6 Hb_000390_300 0.080569638 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
7 Hb_002171_060 0.0808941616 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002078_140 0.0841807543 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
9 Hb_000849_130 0.0842511574 - - PREDICTED: adrenodoxin-like protein, mitochondrial [Nelumbo nucifera]
10 Hb_006693_020 0.0881441304 - - PREDICTED: frataxin, mitochondrial [Gossypium raimondii]
11 Hb_171900_060 0.0884227122 - - PREDICTED: uncharacterized protein LOC105643368 [Jatropha curcas]
12 Hb_001057_040 0.0886944581 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
13 Hb_024439_010 0.0894278956 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
14 Hb_000261_160 0.0900239345 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X2 [Jatropha curcas]
15 Hb_021068_040 0.0904720422 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
16 Hb_006326_040 0.0914814176 - - conserved hypothetical protein [Ricinus communis]
17 Hb_017895_040 0.0930248738 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
18 Hb_008071_020 0.0932755923 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
19 Hb_000329_110 0.0935729301 - - PREDICTED: uncharacterized protein LOC105643142 [Jatropha curcas]
20 Hb_124953_020 0.0941534397 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]

Gene co-expression network

sample Hb_002105_100 Hb_002105_100 Hb_000002_380 Hb_000002_380 Hb_002105_100--Hb_000002_380 Hb_154948_040 Hb_154948_040 Hb_002105_100--Hb_154948_040 Hb_000005_090 Hb_000005_090 Hb_002105_100--Hb_000005_090 Hb_000805_240 Hb_000805_240 Hb_002105_100--Hb_000805_240 Hb_000390_300 Hb_000390_300 Hb_002105_100--Hb_000390_300 Hb_002171_060 Hb_002171_060 Hb_002105_100--Hb_002171_060 Hb_003108_020 Hb_003108_020 Hb_000002_380--Hb_003108_020 Hb_000002_380--Hb_154948_040 Hb_000453_160 Hb_000453_160 Hb_000002_380--Hb_000453_160 Hb_000656_170 Hb_000656_170 Hb_000002_380--Hb_000656_170 Hb_006573_020 Hb_006573_020 Hb_000002_380--Hb_006573_020 Hb_017895_040 Hb_017895_040 Hb_154948_040--Hb_017895_040 Hb_154948_040--Hb_000390_300 Hb_045003_010 Hb_045003_010 Hb_154948_040--Hb_045003_010 Hb_007878_010 Hb_007878_010 Hb_154948_040--Hb_007878_010 Hb_000001_060 Hb_000001_060 Hb_000005_090--Hb_000001_060 Hb_004108_070 Hb_004108_070 Hb_000005_090--Hb_004108_070 Hb_006693_020 Hb_006693_020 Hb_000005_090--Hb_006693_020 Hb_004127_020 Hb_004127_020 Hb_000005_090--Hb_004127_020 Hb_004899_370 Hb_004899_370 Hb_000005_090--Hb_004899_370 Hb_021068_040 Hb_021068_040 Hb_000805_240--Hb_021068_040 Hb_006615_240 Hb_006615_240 Hb_000805_240--Hb_006615_240 Hb_009615_070 Hb_009615_070 Hb_000805_240--Hb_009615_070 Hb_008071_020 Hb_008071_020 Hb_000805_240--Hb_008071_020 Hb_004696_080 Hb_004696_080 Hb_000805_240--Hb_004696_080 Hb_152784_010 Hb_152784_010 Hb_000805_240--Hb_152784_010 Hb_008494_100 Hb_008494_100 Hb_000390_300--Hb_008494_100 Hb_000390_300--Hb_006693_020 Hb_024439_010 Hb_024439_010 Hb_000390_300--Hb_024439_010 Hb_000390_300--Hb_006615_240 Hb_007676_080 Hb_007676_080 Hb_000390_300--Hb_007676_080 Hb_006573_190 Hb_006573_190 Hb_000390_300--Hb_006573_190 Hb_161574_020 Hb_161574_020 Hb_002171_060--Hb_161574_020 Hb_000261_160 Hb_000261_160 Hb_002171_060--Hb_000261_160 Hb_002171_060--Hb_007878_010 Hb_001931_010 Hb_001931_010 Hb_002171_060--Hb_001931_010 Hb_002171_060--Hb_000390_300 Hb_002171_060--Hb_000005_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.6261 35.5251 55.1251 103.107 43.2954 52.4026
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
69.4056 134.991 62.4984 50.7715 27.9957

CAGE analysis