Hb_002107_030

Information

Type -
Description -
Location Contig2107: 24373-29065
Sequence    

Annotation

kegg
ID rcu:RCOM_1598670
description zinc finger protein, putative
nr
ID XP_012073754.1
description PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
swissprot
ID Q8IZQ1
description WD repeat and FYVE domain-containing protein 3 OS=Homo sapiens GN=WDFY3 PE=1 SV=2
trembl
ID E6NTZ2
description JHL20J20.9 protein OS=Jatropha curcas GN=JHL20J20.9 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21795: 24383-29117
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002107_030 0.0 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
2 Hb_000329_470 0.0637743238 - - ccr4-not transcription complex, putative [Ricinus communis]
3 Hb_005054_230 0.0649437422 - - PREDICTED: wiskott-Aldrich syndrome protein family member 2 [Jatropha curcas]
4 Hb_006913_030 0.0695341611 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
5 Hb_167498_010 0.0702292769 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
6 Hb_003050_220 0.0736469775 - - hypothetical protein JCGZ_04601 [Jatropha curcas]
7 Hb_003158_010 0.074797641 - - hypothetical protein JCGZ_17361 [Jatropha curcas]
8 Hb_001369_730 0.0750625864 - - F5O11.10, putative isoform 1 [Theobroma cacao]
9 Hb_000038_170 0.0768310185 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
10 Hb_011671_430 0.0770916555 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
11 Hb_000403_050 0.0774271367 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
12 Hb_001579_220 0.0775502627 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
13 Hb_002499_040 0.0783297383 - - PREDICTED: probable serine/threonine-protein kinase GCN2 isoform X2 [Jatropha curcas]
14 Hb_001226_040 0.0801956298 - - protein with unknown function [Ricinus communis]
15 Hb_002890_290 0.0808467867 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
16 Hb_007691_030 0.0819732304 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
17 Hb_000757_060 0.0829101966 - - hypothetical protein PRUPE_ppa001141mg [Prunus persica]
18 Hb_002141_030 0.0831927605 - - conserved hypothetical protein [Ricinus communis]
19 Hb_017224_030 0.0837807604 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
20 Hb_000853_420 0.0837821906 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002107_030 Hb_002107_030 Hb_000329_470 Hb_000329_470 Hb_002107_030--Hb_000329_470 Hb_005054_230 Hb_005054_230 Hb_002107_030--Hb_005054_230 Hb_006913_030 Hb_006913_030 Hb_002107_030--Hb_006913_030 Hb_167498_010 Hb_167498_010 Hb_002107_030--Hb_167498_010 Hb_003050_220 Hb_003050_220 Hb_002107_030--Hb_003050_220 Hb_003158_010 Hb_003158_010 Hb_002107_030--Hb_003158_010 Hb_000329_470--Hb_003158_010 Hb_003226_180 Hb_003226_180 Hb_000329_470--Hb_003226_180 Hb_000329_470--Hb_167498_010 Hb_000225_040 Hb_000225_040 Hb_000329_470--Hb_000225_040 Hb_001369_730 Hb_001369_730 Hb_000329_470--Hb_001369_730 Hb_001579_220 Hb_001579_220 Hb_000329_470--Hb_001579_220 Hb_005054_230--Hb_001369_730 Hb_000930_030 Hb_000930_030 Hb_005054_230--Hb_000930_030 Hb_000009_090 Hb_000009_090 Hb_005054_230--Hb_000009_090 Hb_002890_290 Hb_002890_290 Hb_005054_230--Hb_002890_290 Hb_005116_160 Hb_005116_160 Hb_005054_230--Hb_005116_160 Hb_006913_030--Hb_003226_180 Hb_002499_040 Hb_002499_040 Hb_006913_030--Hb_002499_040 Hb_000365_120 Hb_000365_120 Hb_006913_030--Hb_000365_120 Hb_006913_030--Hb_003158_010 Hb_002942_190 Hb_002942_190 Hb_006913_030--Hb_002942_190 Hb_167498_010--Hb_001369_730 Hb_167498_010--Hb_003158_010 Hb_001409_020 Hb_001409_020 Hb_167498_010--Hb_001409_020 Hb_167498_010--Hb_000225_040 Hb_007254_070 Hb_007254_070 Hb_167498_010--Hb_007254_070 Hb_003050_220--Hb_001579_220 Hb_001902_140 Hb_001902_140 Hb_003050_220--Hb_001902_140 Hb_000015_040 Hb_000015_040 Hb_003050_220--Hb_000015_040 Hb_032202_190 Hb_032202_190 Hb_003050_220--Hb_032202_190 Hb_000958_110 Hb_000958_110 Hb_003050_220--Hb_000958_110 Hb_003158_010--Hb_000225_040 Hb_002025_020 Hb_002025_020 Hb_003158_010--Hb_002025_020 Hb_000011_200 Hb_000011_200 Hb_003158_010--Hb_000011_200 Hb_000347_070 Hb_000347_070 Hb_003158_010--Hb_000347_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
95.3112 66.7065 42.4834 51.005 70.4582 60.7864
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
101.607 90.1456 69.4353 71.6525 54.2027

CAGE analysis