Hb_002107_050

Information

Type -
Description -
Location Contig2107: 36106-38934
Sequence    

Annotation

kegg
ID pop:POPTR_0005s26400g
description POPTRDRAFT_860476; hypothetical protein
nr
ID XP_012073758.1
description PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
swissprot
ID Q7ZUC7
description Prostaglandin E synthase 2 OS=Danio rerio GN=ptges2 PE=2 SV=1
trembl
ID E6NTZ4
description JHL20J20.11 protein OS=Jatropha curcas GN=JHL20J20.11 PE=3 SV=1
Gene Ontology
ID GO:0005739
description prostaglandin e synthase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21796: 36146-38914 , PASA_asmbl_21797: 39932-40464
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002107_050 0.0 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
2 Hb_003883_010 0.056301726 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
3 Hb_010620_050 0.0624568192 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
4 Hb_003071_030 0.0748570734 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
5 Hb_160271_010 0.0754739064 - - PREDICTED: FAD synthase-like isoform X2 [Jatropha curcas]
6 Hb_005235_070 0.077268214 - - PREDICTED: plastid lipid-associated protein 3, chloroplastic [Jatropha curcas]
7 Hb_012779_080 0.0790819898 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
8 Hb_002915_010 0.0821734357 - - PREDICTED: transcriptional activator DEMETER isoform X1 [Jatropha curcas]
9 Hb_002218_020 0.0861725572 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
10 Hb_000327_330 0.0891049391 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000680_010 0.0911019524 - - PREDICTED: putative hydrolase C777.06c [Populus euphratica]
12 Hb_009288_040 0.0912133344 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
13 Hb_000555_020 0.092808264 - - APO protein 2, chloroplast precursor, putative [Ricinus communis]
14 Hb_000094_100 0.0959710141 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
15 Hb_000260_710 0.0964350524 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
16 Hb_000016_310 0.0972436581 - - protein binding protein, putative [Ricinus communis]
17 Hb_000320_190 0.0978512599 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
18 Hb_102948_010 0.0991408425 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
19 Hb_022693_130 0.0997764502 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
20 Hb_000318_220 0.099902566 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002107_050 Hb_002107_050 Hb_003883_010 Hb_003883_010 Hb_002107_050--Hb_003883_010 Hb_010620_050 Hb_010620_050 Hb_002107_050--Hb_010620_050 Hb_003071_030 Hb_003071_030 Hb_002107_050--Hb_003071_030 Hb_160271_010 Hb_160271_010 Hb_002107_050--Hb_160271_010 Hb_005235_070 Hb_005235_070 Hb_002107_050--Hb_005235_070 Hb_012779_080 Hb_012779_080 Hb_002107_050--Hb_012779_080 Hb_000680_010 Hb_000680_010 Hb_003883_010--Hb_000680_010 Hb_002915_010 Hb_002915_010 Hb_003883_010--Hb_002915_010 Hb_003883_010--Hb_005235_070 Hb_002218_020 Hb_002218_020 Hb_003883_010--Hb_002218_020 Hb_000318_220 Hb_000318_220 Hb_003883_010--Hb_000318_220 Hb_010620_050--Hb_012779_080 Hb_010620_050--Hb_003071_030 Hb_010620_050--Hb_160271_010 Hb_138585_030 Hb_138585_030 Hb_010620_050--Hb_138585_030 Hb_009288_040 Hb_009288_040 Hb_010620_050--Hb_009288_040 Hb_001789_160 Hb_001789_160 Hb_003071_030--Hb_001789_160 Hb_000302_190 Hb_000302_190 Hb_003071_030--Hb_000302_190 Hb_000327_330 Hb_000327_330 Hb_003071_030--Hb_000327_330 Hb_003071_030--Hb_012779_080 Hb_022693_130 Hb_022693_130 Hb_160271_010--Hb_022693_130 Hb_000291_180 Hb_000291_180 Hb_160271_010--Hb_000291_180 Hb_000320_190 Hb_000320_190 Hb_160271_010--Hb_000320_190 Hb_156850_100 Hb_156850_100 Hb_160271_010--Hb_156850_100 Hb_000108_020 Hb_000108_020 Hb_160271_010--Hb_000108_020 Hb_000555_020 Hb_000555_020 Hb_005235_070--Hb_000555_020 Hb_102948_010 Hb_102948_010 Hb_005235_070--Hb_102948_010 Hb_000107_340 Hb_000107_340 Hb_005235_070--Hb_000107_340 Hb_005235_070--Hb_002218_020 Hb_005665_090 Hb_005665_090 Hb_012779_080--Hb_005665_090 Hb_012779_080--Hb_000320_190 Hb_001623_490 Hb_001623_490 Hb_012779_080--Hb_001623_490 Hb_012779_080--Hb_002915_010 Hb_012779_080--Hb_009288_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.9039 26.6175 71.6266 41.9463 20.6283 16.5245
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3031 22.4234 13.0219 12.6224 65.2427

CAGE analysis