Hb_002107_080

Information

Type -
Description -
Location Contig2107: 58083-61694
Sequence    

Annotation

kegg
ID pop:POPTR_0002s02010g
description POPTRDRAFT_709916; putative subtilisin precursor family protein
nr
ID BAJ53097.1
description JHL20J20.3 [Jatropha curcas]
swissprot
ID Q9LNU1
description CO(2)-response secreted protease OS=Arabidopsis thaliana GN=CRSP PE=2 SV=1
trembl
ID E6NTY7
description JHL20J20.3 protein OS=Jatropha curcas GN=JHL20J20.3 PE=4 SV=1
Gene Ontology
ID GO:0008236
description co -response secreted protease-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21807: 58860-59723 , PASA_asmbl_21808: 60415-61038
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002107_080 0.0 - - JHL20J20.3 [Jatropha curcas]
2 Hb_000417_230 0.0730938691 - - conserved hypothetical protein [Ricinus communis]
3 Hb_094839_010 0.0891210933 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004968_050 0.0981510369 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
5 Hb_073973_180 0.1032531683 - - PREDICTED: WAT1-related protein At4g08290 isoform X1 [Populus euphratica]
6 Hb_000318_320 0.1048736291 - - PREDICTED: transmembrane protein 45B [Jatropha curcas]
7 Hb_010573_030 0.116667932 - - conserved hypothetical protein [Ricinus communis]
8 Hb_043115_010 0.1256743655 - - hypothetical protein JCGZ_16710 [Jatropha curcas]
9 Hb_000134_010 0.1296242096 - - -
10 Hb_007728_010 0.1323776357 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
11 Hb_002078_210 0.133108357 - - PREDICTED: cytochrome P450 78A5-like [Jatropha curcas]
12 Hb_005183_010 0.1350181442 - - PREDICTED: probable calcium-binding protein CML17 [Malus domestica]
13 Hb_010012_020 0.1362849054 - - conserved hypothetical protein [Ricinus communis]
14 Hb_011609_060 0.1364608717 - - PREDICTED: cytokinin hydroxylase [Jatropha curcas]
15 Hb_000087_180 0.1385599669 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007007_110 0.1392235012 - - hypothetical protein JCGZ_14479 [Jatropha curcas]
17 Hb_165552_020 0.1410873571 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
18 Hb_001213_140 0.1430656486 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
19 Hb_002420_030 0.1433540539 - - Disease resistance protein RPS5, putative [Ricinus communis]
20 Hb_170979_010 0.143661144 - - PREDICTED: peroxidase 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_002107_080 Hb_002107_080 Hb_000417_230 Hb_000417_230 Hb_002107_080--Hb_000417_230 Hb_094839_010 Hb_094839_010 Hb_002107_080--Hb_094839_010 Hb_004968_050 Hb_004968_050 Hb_002107_080--Hb_004968_050 Hb_073973_180 Hb_073973_180 Hb_002107_080--Hb_073973_180 Hb_000318_320 Hb_000318_320 Hb_002107_080--Hb_000318_320 Hb_010573_030 Hb_010573_030 Hb_002107_080--Hb_010573_030 Hb_000417_230--Hb_094839_010 Hb_000417_230--Hb_073973_180 Hb_000417_230--Hb_010573_030 Hb_003071_040 Hb_003071_040 Hb_000417_230--Hb_003071_040 Hb_000417_230--Hb_004968_050 Hb_094839_010--Hb_073973_180 Hb_094839_010--Hb_010573_030 Hb_000134_010 Hb_000134_010 Hb_094839_010--Hb_000134_010 Hb_007728_010 Hb_007728_010 Hb_094839_010--Hb_007728_010 Hb_000087_180 Hb_000087_180 Hb_004968_050--Hb_000087_180 Hb_004968_050--Hb_073973_180 Hb_005183_010 Hb_005183_010 Hb_004968_050--Hb_005183_010 Hb_004968_050--Hb_000318_320 Hb_161045_010 Hb_161045_010 Hb_073973_180--Hb_161045_010 Hb_001098_020 Hb_001098_020 Hb_073973_180--Hb_001098_020 Hb_073973_180--Hb_010573_030 Hb_077562_010 Hb_077562_010 Hb_000318_320--Hb_077562_010 Hb_000984_120 Hb_000984_120 Hb_000318_320--Hb_000984_120 Hb_007007_110 Hb_007007_110 Hb_000318_320--Hb_007007_110 Hb_002078_210 Hb_002078_210 Hb_000318_320--Hb_002078_210 Hb_011609_060 Hb_011609_060 Hb_000318_320--Hb_011609_060 Hb_010573_030--Hb_007728_010 Hb_002422_020 Hb_002422_020 Hb_010573_030--Hb_002422_020 Hb_137612_010 Hb_137612_010 Hb_010573_030--Hb_137612_010 Hb_013591_010 Hb_013591_010 Hb_010573_030--Hb_013591_010 Hb_010573_030--Hb_000134_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0722425 9.33334 0.717183 4.4164 0.0812949 0.00749078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0194505 0.0306099 0.0582416 0.0364906 0.16232

CAGE analysis