Hb_002110_030

Information

Type -
Description -
Location Contig2110: 38005-47540
Sequence    

Annotation

kegg
ID rcu:RCOM_1038950
description WD and tetratricopeptide repeat protein, putative
nr
ID XP_012067963.1
description PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
swissprot
ID Q8N5D0
description WD and tetratricopeptide repeats protein 1 OS=Homo sapiens GN=WDTC1 PE=1 SV=2
trembl
ID A0A067LAC0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15862 PE=4 SV=1
Gene Ontology
ID GO:0005886
description wd and tetratricopeptide repeats protein 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21845: 38062-42110 , PASA_asmbl_21846: 42680-43941 , PASA_asmbl_21847: 45018-63527
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002110_030 0.0 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
2 Hb_006831_040 0.0858182593 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
3 Hb_001019_180 0.0887942027 - - PREDICTED: uncharacterized protein LOC105639324 [Jatropha curcas]
4 Hb_073562_010 0.090532315 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
5 Hb_000330_040 0.0939811916 - - PREDICTED: protein RER1B-like [Jatropha curcas]
6 Hb_011512_090 0.0955808593 - - Hydroxyethylthiazole kinase, putative [Ricinus communis]
7 Hb_001575_010 0.096430502 - - PREDICTED: pumilio homolog 6, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_012799_120 0.1012777135 - - PREDICTED: DNA mismatch repair protein MSH3 isoform X1 [Jatropha curcas]
9 Hb_005214_090 0.1042575849 - - PREDICTED: uncharacterized protein LOC105636015 [Jatropha curcas]
10 Hb_002005_090 0.1048861787 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000200_280 0.1051934352 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
12 Hb_001427_070 0.1077572267 - - PREDICTED: xaa-Pro dipeptidase [Jatropha curcas]
13 Hb_000853_120 0.1079179169 - - PREDICTED: ethylene response sensor 1 [Jatropha curcas]
14 Hb_000575_120 0.1080294601 - - hypothetical protein POPTR_0011s02060g [Populus trichocarpa]
15 Hb_001761_130 0.112808513 - - PREDICTED: uncharacterized protein LOC105646118 isoform X1 [Jatropha curcas]
16 Hb_000856_310 0.1128186325 - - PREDICTED: hypersensitive-induced response protein 1 [Jatropha curcas]
17 Hb_002007_240 0.1129466315 - - PREDICTED: F-box protein At1g55000 [Jatropha curcas]
18 Hb_000976_040 0.1153487527 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
19 Hb_000140_480 0.1176328698 - - PREDICTED: uncharacterized protein LOC105637350 [Jatropha curcas]
20 Hb_001301_170 0.1179822018 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]

Gene co-expression network

sample Hb_002110_030 Hb_002110_030 Hb_006831_040 Hb_006831_040 Hb_002110_030--Hb_006831_040 Hb_001019_180 Hb_001019_180 Hb_002110_030--Hb_001019_180 Hb_073562_010 Hb_073562_010 Hb_002110_030--Hb_073562_010 Hb_000330_040 Hb_000330_040 Hb_002110_030--Hb_000330_040 Hb_011512_090 Hb_011512_090 Hb_002110_030--Hb_011512_090 Hb_001575_010 Hb_001575_010 Hb_002110_030--Hb_001575_010 Hb_001761_130 Hb_001761_130 Hb_006831_040--Hb_001761_130 Hb_172632_110 Hb_172632_110 Hb_006831_040--Hb_172632_110 Hb_010174_110 Hb_010174_110 Hb_006831_040--Hb_010174_110 Hb_002740_110 Hb_002740_110 Hb_006831_040--Hb_002740_110 Hb_004994_220 Hb_004994_220 Hb_006831_040--Hb_004994_220 Hb_004117_310 Hb_004117_310 Hb_006831_040--Hb_004117_310 Hb_001019_180--Hb_000330_040 Hb_012799_120 Hb_012799_120 Hb_001019_180--Hb_012799_120 Hb_002890_090 Hb_002890_090 Hb_001019_180--Hb_002890_090 Hb_023226_080 Hb_023226_080 Hb_001019_180--Hb_023226_080 Hb_002006_040 Hb_002006_040 Hb_001019_180--Hb_002006_040 Hb_073562_010--Hb_000330_040 Hb_003020_050 Hb_003020_050 Hb_073562_010--Hb_003020_050 Hb_008775_040 Hb_008775_040 Hb_073562_010--Hb_008775_040 Hb_073562_010--Hb_001019_180 Hb_002701_040 Hb_002701_040 Hb_073562_010--Hb_002701_040 Hb_000976_210 Hb_000976_210 Hb_000330_040--Hb_000976_210 Hb_000330_040--Hb_008775_040 Hb_002636_180 Hb_002636_180 Hb_000330_040--Hb_002636_180 Hb_000345_140 Hb_000345_140 Hb_000330_040--Hb_000345_140 Hb_000976_040 Hb_000976_040 Hb_011512_090--Hb_000976_040 Hb_002400_400 Hb_002400_400 Hb_011512_090--Hb_002400_400 Hb_000200_280 Hb_000200_280 Hb_011512_090--Hb_000200_280 Hb_002005_090 Hb_002005_090 Hb_011512_090--Hb_002005_090 Hb_001621_130 Hb_001621_130 Hb_011512_090--Hb_001621_130 Hb_000069_410 Hb_000069_410 Hb_001575_010--Hb_000069_410 Hb_005143_030 Hb_005143_030 Hb_001575_010--Hb_005143_030 Hb_001821_090 Hb_001821_090 Hb_001575_010--Hb_001821_090 Hb_028487_010 Hb_028487_010 Hb_001575_010--Hb_028487_010 Hb_002170_050 Hb_002170_050 Hb_001575_010--Hb_002170_050 Hb_011173_030 Hb_011173_030 Hb_001575_010--Hb_011173_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.73551 10.779 2.50029 3.70937 8.77138 6.48404
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.1064 3.88764 6.62294 11.7589 2.55792

CAGE analysis