Hb_002110_040

Information

Type -
Description -
Location Contig2110: 63368-63916
Sequence    

Annotation

kegg
ID atr:s00135p00074190
description AMTR_s00135p00074190; hypothetical protein
nr
ID ERN02915.1
description hypothetical protein AMTR_s00135p00074190 [Amborella trichopoda]
swissprot
ID Q9M2Z2
description COMPASS-like H3K4 histone methylase component WDR5A OS=Arabidopsis thaliana GN=WDR5A PE=1 SV=1
trembl
ID W1P7G6
description Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00135p00074190 PE=4 SV=1
Gene Ontology
ID GO:0005886
description wd and tetratricopeptide repeats protein 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21847: 45018-63527
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002110_040 0.0 - - hypothetical protein AMTR_s00135p00074190 [Amborella trichopoda]
2 Hb_115107_010 0.0801516327 - - Early-responsive to dehydration stress protein (ERD4) isoform 1 [Theobroma cacao]
3 Hb_001135_140 0.1056928396 - - PREDICTED: serine/threonine-protein kinase PBS1-like [Malus domestica]
4 Hb_003633_040 0.1377092998 - - hypothetical protein B456_008G146200 [Gossypium raimondii]
5 Hb_000359_140 0.1402182843 - - PREDICTED: transmembrane protein 56-like [Jatropha curcas]
6 Hb_000109_170 0.1445832753 - - PREDICTED: uncharacterized protein LOC105649868 isoform X1 [Jatropha curcas]
7 Hb_009529_040 0.1446208496 - - PREDICTED: transmembrane protein 120 homolog isoform X1 [Malus domestica]
8 Hb_069738_010 0.1469612397 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
9 Hb_000009_240 0.1509229031 - - PREDICTED: E3 ubiquitin-protein ligase RNF185-like isoform X1 [Jatropha curcas]
10 Hb_007026_040 0.1539378579 - - PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Eucalyptus grandis]
11 Hb_000035_200 0.1547393231 - - PREDICTED: phospholipase D Z-like [Jatropha curcas]
12 Hb_000608_240 0.1548463407 - - eIF4-gamma/eIF5/eIF2-epsilon domain-containing family protein [Populus trichocarpa]
13 Hb_026228_020 0.1560658658 - - PREDICTED: uncharacterized protein LOC105632747 [Jatropha curcas]
14 Hb_076875_020 0.1568412566 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
15 Hb_002611_020 0.1577739038 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [Populus euphratica]
16 Hb_054586_020 0.1582322243 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
17 Hb_000608_320 0.158326596 - - PREDICTED: uncharacterized protein LOC105644891 [Jatropha curcas]
18 Hb_000072_130 0.1585461733 - - hypothetical protein OsJ_28567 [Oryza sativa Japonica Group]
19 Hb_005170_040 0.1594710278 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
20 Hb_131035_010 0.1605047546 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_002110_040 Hb_002110_040 Hb_115107_010 Hb_115107_010 Hb_002110_040--Hb_115107_010 Hb_001135_140 Hb_001135_140 Hb_002110_040--Hb_001135_140 Hb_003633_040 Hb_003633_040 Hb_002110_040--Hb_003633_040 Hb_000359_140 Hb_000359_140 Hb_002110_040--Hb_000359_140 Hb_000109_170 Hb_000109_170 Hb_002110_040--Hb_000109_170 Hb_009529_040 Hb_009529_040 Hb_002110_040--Hb_009529_040 Hb_115107_010--Hb_009529_040 Hb_115477_010 Hb_115477_010 Hb_115107_010--Hb_115477_010 Hb_007026_040 Hb_007026_040 Hb_115107_010--Hb_007026_040 Hb_115107_010--Hb_001135_140 Hb_168973_010 Hb_168973_010 Hb_115107_010--Hb_168973_010 Hb_005023_030 Hb_005023_030 Hb_001135_140--Hb_005023_030 Hb_001135_140--Hb_000359_140 Hb_002067_120 Hb_002067_120 Hb_001135_140--Hb_002067_120 Hb_001018_130 Hb_001018_130 Hb_001135_140--Hb_001018_130 Hb_003633_040--Hb_115107_010 Hb_076875_020 Hb_076875_020 Hb_003633_040--Hb_076875_020 Hb_003633_040--Hb_115477_010 Hb_019053_010 Hb_019053_010 Hb_003633_040--Hb_019053_010 Hb_000850_040 Hb_000850_040 Hb_003633_040--Hb_000850_040 Hb_027760_070 Hb_027760_070 Hb_000359_140--Hb_027760_070 Hb_074715_010 Hb_074715_010 Hb_000359_140--Hb_074715_010 Hb_000260_600 Hb_000260_600 Hb_000359_140--Hb_000260_600 Hb_000457_140 Hb_000457_140 Hb_000359_140--Hb_000457_140 Hb_000140_350 Hb_000140_350 Hb_000359_140--Hb_000140_350 Hb_099878_030 Hb_099878_030 Hb_000109_170--Hb_099878_030 Hb_000915_240 Hb_000915_240 Hb_000109_170--Hb_000915_240 Hb_000140_280 Hb_000140_280 Hb_000109_170--Hb_000140_280 Hb_050147_010 Hb_050147_010 Hb_000109_170--Hb_050147_010 Hb_006856_010 Hb_006856_010 Hb_000109_170--Hb_006856_010 Hb_000159_090 Hb_000159_090 Hb_000109_170--Hb_000159_090 Hb_000032_070 Hb_000032_070 Hb_009529_040--Hb_000032_070 Hb_001018_110 Hb_001018_110 Hb_009529_040--Hb_001018_110 Hb_002150_040 Hb_002150_040 Hb_009529_040--Hb_002150_040 Hb_002611_020 Hb_002611_020 Hb_009529_040--Hb_002611_020 Hb_187953_010 Hb_187953_010 Hb_009529_040--Hb_187953_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.99234 15.5522 4.99107 39.4706 16.2352 39.3947
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.0438 10.3782 18.5367 19.3376 6.57038

CAGE analysis