Hb_002110_050

Information

Type -
Description -
Location Contig2110: 67364-68568
Sequence    

Annotation

kegg
ID rcu:RCOM_1038840
description hypothetical protein
nr
ID XP_002514011.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RJU2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1038840 PE=4 SV=1
Gene Ontology
ID GO:0008270
description myb-like protein h isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21848: 67473-67951
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002110_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002548_020 0.0550068091 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
3 Hb_002218_080 0.0632328985 - - Ankyrin repeat family protein, putative [Theobroma cacao]
4 Hb_004241_100 0.0777630982 - - PREDICTED: transcription factor bHLH123-like isoform X1 [Populus euphratica]
5 Hb_160576_010 0.0820732613 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
6 Hb_000032_230 0.0970127061 transcription factor TF Family: ERF hypothetical protein JCGZ_20463 [Jatropha curcas]
7 Hb_134022_010 0.097442291 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
8 Hb_070613_010 0.1094523001 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
9 Hb_000060_100 0.1162130393 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
10 Hb_000024_020 0.1171116578 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
11 Hb_006002_020 0.1171793362 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
12 Hb_001956_160 0.1194401115 - - hypothetical protein L484_009438 [Morus notabilis]
13 Hb_001310_080 0.1214002385 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]
14 Hb_004112_050 0.122740012 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
15 Hb_004724_300 0.123620411 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
16 Hb_113396_010 0.1239849454 - - cytochrome P450, putative [Ricinus communis]
17 Hb_008948_110 0.1240449506 - - PREDICTED: peroxidase 25 [Jatropha curcas]
18 Hb_000780_110 0.1253753563 - - cation-transporting atpase plant, putative [Ricinus communis]
19 Hb_000127_200 0.1262134762 - - PREDICTED: uncharacterized protein LOC100255537 [Vitis vinifera]
20 Hb_002725_080 0.132128721 - - protein phosphatase 2c, putative [Ricinus communis]

Gene co-expression network

sample Hb_002110_050 Hb_002110_050 Hb_002548_020 Hb_002548_020 Hb_002110_050--Hb_002548_020 Hb_002218_080 Hb_002218_080 Hb_002110_050--Hb_002218_080 Hb_004241_100 Hb_004241_100 Hb_002110_050--Hb_004241_100 Hb_160576_010 Hb_160576_010 Hb_002110_050--Hb_160576_010 Hb_000032_230 Hb_000032_230 Hb_002110_050--Hb_000032_230 Hb_134022_010 Hb_134022_010 Hb_002110_050--Hb_134022_010 Hb_002548_020--Hb_004241_100 Hb_002548_020--Hb_002218_080 Hb_070613_010 Hb_070613_010 Hb_002548_020--Hb_070613_010 Hb_000127_200 Hb_000127_200 Hb_002548_020--Hb_000127_200 Hb_002548_020--Hb_160576_010 Hb_001310_080 Hb_001310_080 Hb_002218_080--Hb_001310_080 Hb_113396_010 Hb_113396_010 Hb_002218_080--Hb_113396_010 Hb_000024_020 Hb_000024_020 Hb_002218_080--Hb_000024_020 Hb_004112_050 Hb_004112_050 Hb_002218_080--Hb_004112_050 Hb_004241_100--Hb_002218_080 Hb_155015_020 Hb_155015_020 Hb_004241_100--Hb_155015_020 Hb_002811_320 Hb_002811_320 Hb_004241_100--Hb_002811_320 Hb_004241_100--Hb_000032_230 Hb_000060_100 Hb_000060_100 Hb_160576_010--Hb_000060_100 Hb_160576_010--Hb_000032_230 Hb_160576_010--Hb_002218_080 Hb_001956_160 Hb_001956_160 Hb_160576_010--Hb_001956_160 Hb_000780_110 Hb_000780_110 Hb_000032_230--Hb_000780_110 Hb_000032_230--Hb_001956_160 Hb_000032_230--Hb_002548_020 Hb_004724_300 Hb_004724_300 Hb_134022_010--Hb_004724_300 Hb_008810_030 Hb_008810_030 Hb_134022_010--Hb_008810_030 Hb_000402_180 Hb_000402_180 Hb_134022_010--Hb_000402_180 Hb_036492_020 Hb_036492_020 Hb_134022_010--Hb_036492_020 Hb_001821_050 Hb_001821_050 Hb_134022_010--Hb_001821_050 Hb_004393_030 Hb_004393_030 Hb_134022_010--Hb_004393_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0454576 37.4014 16.2728 17.9439 0 0.0218246
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.146017 8.30103

CAGE analysis