Hb_002110_100

Information

Type -
Description -
Location Contig2110: 111127-125796
Sequence    

Annotation

kegg
ID rcu:RCOM_1038570
description pyridoxamine 5-phosphate oxidase, putative (EC:1.4.3.5)
nr
ID XP_012067952.1
description PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
swissprot
ID Q9LTX3
description Pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic OS=Arabidopsis thaliana GN=PPOX1 PE=1 SV=1
trembl
ID A0A067LBF4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15856 PE=3 SV=1
Gene Ontology
ID GO:0005829
description pyridoxine pyridoxamine 5 -phosphate oxidase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21856: 112527-125679 , PASA_asmbl_21857: 112533-120151
cDNA
(Sanger)
(ID:Location)		 046_G21.ab1: 123302-125679 , 053_H02.ab1: 123303-125679

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002110_100 0.0 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
2 Hb_032920_070 0.0652834952 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
3 Hb_003305_040 0.070061939 - - AP47/50p mRNA family protein [Populus trichocarpa]
4 Hb_002392_010 0.0760044128 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
5 Hb_004158_020 0.0772422891 - - Rab1 [Hevea brasiliensis]
6 Hb_005653_070 0.080217248 - - K+ transport growth defect-like protein [Hevea brasiliensis]
7 Hb_005701_120 0.0827018937 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
8 Hb_000402_130 0.0864910802 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
9 Hb_020390_010 0.0881950569 - - PREDICTED: expansin-A13 [Jatropha curcas]
10 Hb_000964_030 0.0896743179 - - ADP/ATP carrier 2 [Theobroma cacao]
11 Hb_000060_050 0.0907206401 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
12 Hb_007441_080 0.0909410236 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
13 Hb_000243_350 0.0923360677 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Tarenaya hassleriana]
14 Hb_012305_130 0.0932940556 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
15 Hb_006059_010 0.0953005802 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
16 Hb_185830_060 0.0959601882 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
17 Hb_001662_130 0.0963289707 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
18 Hb_000590_120 0.0965399253 - - dehydroascorbate reductase, putative [Ricinus communis]
19 Hb_066842_010 0.0975768927 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
20 Hb_008147_090 0.0977047328 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002110_100 Hb_002110_100 Hb_032920_070 Hb_032920_070 Hb_002110_100--Hb_032920_070 Hb_003305_040 Hb_003305_040 Hb_002110_100--Hb_003305_040 Hb_002392_010 Hb_002392_010 Hb_002110_100--Hb_002392_010 Hb_004158_020 Hb_004158_020 Hb_002110_100--Hb_004158_020 Hb_005653_070 Hb_005653_070 Hb_002110_100--Hb_005653_070 Hb_005701_120 Hb_005701_120 Hb_002110_100--Hb_005701_120 Hb_020390_010 Hb_020390_010 Hb_032920_070--Hb_020390_010 Hb_000297_120 Hb_000297_120 Hb_032920_070--Hb_000297_120 Hb_032920_070--Hb_002392_010 Hb_015057_020 Hb_015057_020 Hb_032920_070--Hb_015057_020 Hb_000185_220 Hb_000185_220 Hb_032920_070--Hb_000185_220 Hb_000060_050 Hb_000060_050 Hb_003305_040--Hb_000060_050 Hb_000252_100 Hb_000252_100 Hb_003305_040--Hb_000252_100 Hb_000454_090 Hb_000454_090 Hb_003305_040--Hb_000454_090 Hb_000173_410 Hb_000173_410 Hb_003305_040--Hb_000173_410 Hb_005601_040 Hb_005601_040 Hb_003305_040--Hb_005601_040 Hb_001946_390 Hb_001946_390 Hb_002392_010--Hb_001946_390 Hb_002392_010--Hb_000185_220 Hb_066842_010 Hb_066842_010 Hb_002392_010--Hb_066842_010 Hb_002392_010--Hb_005601_040 Hb_000402_130 Hb_000402_130 Hb_004158_020--Hb_000402_130 Hb_004158_020--Hb_032920_070 Hb_001754_080 Hb_001754_080 Hb_004158_020--Hb_001754_080 Hb_004007_110 Hb_004007_110 Hb_004158_020--Hb_004007_110 Hb_000023_310 Hb_000023_310 Hb_004158_020--Hb_000023_310 Hb_000964_030 Hb_000964_030 Hb_005653_070--Hb_000964_030 Hb_038574_010 Hb_038574_010 Hb_005653_070--Hb_038574_010 Hb_189216_010 Hb_189216_010 Hb_005653_070--Hb_189216_010 Hb_001728_040 Hb_001728_040 Hb_005653_070--Hb_001728_040 Hb_007218_120 Hb_007218_120 Hb_005653_070--Hb_007218_120 Hb_000069_640 Hb_000069_640 Hb_005653_070--Hb_000069_640 Hb_005701_120--Hb_000402_130 Hb_000800_090 Hb_000800_090 Hb_005701_120--Hb_000800_090 Hb_003988_050 Hb_003988_050 Hb_005701_120--Hb_003988_050 Hb_185830_060 Hb_185830_060 Hb_005701_120--Hb_185830_060 Hb_001957_010 Hb_001957_010 Hb_005701_120--Hb_001957_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.14369 3.28906 7.13929 13.3164 2.11731 2.64501
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.49619 6.98763 7.07578 6.00473 8.46021

CAGE analysis