Hb_002110_150

Information

Type -
Description -
Location Contig2110: 138015-141634
Sequence    

Annotation

kegg
ID pop:POPTR_0005s27290g
description POPTRDRAFT_1079894; hypothetical protein
nr
ID XP_012067947.1
description PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
swissprot
ID Q8W490
description Serine/threonine-protein kinase PEPKR2 OS=Arabidopsis thaliana GN=PEPKR2 PE=2 SV=1
trembl
ID A0A067LAB1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15852 PE=4 SV=1
Gene Ontology
ID GO:0004683
description serine threonine-protein kinase pepkr2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21861: 138180-141445
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002110_150 0.0 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
2 Hb_002046_180 0.0453991917 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
3 Hb_008725_260 0.0470585542 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
4 Hb_005779_060 0.053369165 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
5 Hb_005463_100 0.0576607037 - - hypothetical protein POPTR_0001s08400g [Populus trichocarpa]
6 Hb_000016_250 0.0589419477 - - unnamed protein product [Malassezia sympodialis ATCC 42132]
7 Hb_009767_110 0.0620887602 - - -
8 Hb_001157_040 0.0632984921 - - casein kinase, putative [Ricinus communis]
9 Hb_000684_470 0.0642309927 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
10 Hb_000876_070 0.0647006516 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
11 Hb_000866_220 0.0664124927 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
12 Hb_012019_010 0.0668414608 - - PREDICTED: F-box/kelch-repeat protein SKIP30 [Jatropha curcas]
13 Hb_000003_250 0.0685958743 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
14 Hb_015934_040 0.0686506265 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
15 Hb_000563_320 0.0698653324 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
16 Hb_003371_090 0.0709506701 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
17 Hb_000538_270 0.0717019547 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
18 Hb_007416_180 0.0721112942 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
19 Hb_002739_100 0.0721241687 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
20 Hb_000331_550 0.0728016004 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]

Gene co-expression network

sample Hb_002110_150 Hb_002110_150 Hb_002046_180 Hb_002046_180 Hb_002110_150--Hb_002046_180 Hb_008725_260 Hb_008725_260 Hb_002110_150--Hb_008725_260 Hb_005779_060 Hb_005779_060 Hb_002110_150--Hb_005779_060 Hb_005463_100 Hb_005463_100 Hb_002110_150--Hb_005463_100 Hb_000016_250 Hb_000016_250 Hb_002110_150--Hb_000016_250 Hb_009767_110 Hb_009767_110 Hb_002110_150--Hb_009767_110 Hb_012019_010 Hb_012019_010 Hb_002046_180--Hb_012019_010 Hb_002046_180--Hb_005779_060 Hb_000876_070 Hb_000876_070 Hb_002046_180--Hb_000876_070 Hb_002046_180--Hb_008725_260 Hb_002046_180--Hb_005463_100 Hb_000866_220 Hb_000866_220 Hb_008725_260--Hb_000866_220 Hb_009178_030 Hb_009178_030 Hb_008725_260--Hb_009178_030 Hb_008725_260--Hb_000876_070 Hb_007532_030 Hb_007532_030 Hb_008725_260--Hb_007532_030 Hb_005779_060--Hb_000876_070 Hb_005779_060--Hb_000016_250 Hb_002739_100 Hb_002739_100 Hb_005779_060--Hb_002739_100 Hb_000062_220 Hb_000062_220 Hb_005779_060--Hb_000062_220 Hb_005463_100--Hb_012019_010 Hb_000684_470 Hb_000684_470 Hb_005463_100--Hb_000684_470 Hb_000003_250 Hb_000003_250 Hb_005463_100--Hb_000003_250 Hb_005463_100--Hb_009767_110 Hb_000563_320 Hb_000563_320 Hb_000016_250--Hb_000563_320 Hb_001157_040 Hb_001157_040 Hb_000016_250--Hb_001157_040 Hb_000096_070 Hb_000096_070 Hb_000016_250--Hb_000096_070 Hb_001242_060 Hb_001242_060 Hb_000016_250--Hb_001242_060 Hb_031527_040 Hb_031527_040 Hb_000016_250--Hb_031527_040 Hb_044728_010 Hb_044728_010 Hb_009767_110--Hb_044728_010 Hb_006649_050 Hb_006649_050 Hb_009767_110--Hb_006649_050 Hb_001198_100 Hb_001198_100 Hb_009767_110--Hb_001198_100 Hb_002725_120 Hb_002725_120 Hb_009767_110--Hb_002725_120 Hb_008554_130 Hb_008554_130 Hb_009767_110--Hb_008554_130 Hb_009767_110--Hb_000684_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9843 14.3207 9.70269 8.78547 12.3059 13.0298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.0287 17.1981 21.9191 9.72791 11.1709

CAGE analysis