Hb_002110_160

Information

Type -
Description -
Location Contig2110: 141853-145954
Sequence    

Annotation

kegg
ID pop:POPTR_0017s07840g
description hypothetical protein
nr
ID XP_012067948.1
description PREDICTED: phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [Jatropha curcas]
swissprot
ID P38025
description Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic OS=Arabidopsis thaliana GN=PUR7 PE=2 SV=2
trembl
ID A0A067LBE9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15851 PE=3 SV=1
Gene Ontology
ID GO:0009570
description phosphoribosylaminoimidazole-succinocarboxamide chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21862: 141860-145884 , PASA_asmbl_21863: 141860-145881 , PASA_asmbl_21864: 143145-145884 , PASA_asmbl_21865: 141860-143086
cDNA
(Sanger)
(ID:Location)		 030_P10.ab1: 143145-144056 , 033_L10.ab1: 141873-143376 , 038_N03.ab1: 141860-143580

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002110_160 0.0 - - PREDICTED: phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [Jatropha curcas]
2 Hb_000282_090 0.0582814944 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
3 Hb_010775_030 0.0617950424 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
4 Hb_010287_020 0.0652851239 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
5 Hb_000207_200 0.0677538451 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
6 Hb_004870_050 0.0697311803 - - PREDICTED: ATP-dependent RNA helicase DBP3 [Jatropha curcas]
7 Hb_000868_120 0.0713680094 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]
8 Hb_000089_210 0.0728367335 - - unknown [Medicago truncatula]
9 Hb_033642_120 0.0735750122 - - PREDICTED: nucleolar GTP-binding protein 2 [Vitis vinifera]
10 Hb_002909_040 0.0753879176 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
11 Hb_003470_040 0.0755269378 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Jatropha curcas]
12 Hb_004648_090 0.0790462257 - - peroxisomal biogenesis factor, putative [Ricinus communis]
13 Hb_004994_240 0.0812791535 - - hypothetical protein PRUPE_ppa004633mg [Prunus persica]
14 Hb_000230_460 0.0825134239 - - Speckle-type POZ protein, putative [Ricinus communis]
15 Hb_001300_010 0.0825404007 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
16 Hb_029695_080 0.0854088153 - - PREDICTED: NAD-dependent protein deacetylase SRT1 [Prunus mume]
17 Hb_001863_140 0.0854142827 - - PREDICTED: cytochrome c oxidase subunit 6b-1 [Jatropha curcas]
18 Hb_000086_420 0.0854822867 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
19 Hb_002232_480 0.0855766344 - - PREDICTED: telomerase reverse transcriptase [Jatropha curcas]
20 Hb_000723_030 0.0860196126 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002110_160 Hb_002110_160 Hb_000282_090 Hb_000282_090 Hb_002110_160--Hb_000282_090 Hb_010775_030 Hb_010775_030 Hb_002110_160--Hb_010775_030 Hb_010287_020 Hb_010287_020 Hb_002110_160--Hb_010287_020 Hb_000207_200 Hb_000207_200 Hb_002110_160--Hb_000207_200 Hb_004870_050 Hb_004870_050 Hb_002110_160--Hb_004870_050 Hb_000868_120 Hb_000868_120 Hb_002110_160--Hb_000868_120 Hb_000282_090--Hb_000207_200 Hb_000282_090--Hb_004870_050 Hb_000089_210 Hb_000089_210 Hb_000282_090--Hb_000089_210 Hb_002716_060 Hb_002716_060 Hb_000282_090--Hb_002716_060 Hb_002413_010 Hb_002413_010 Hb_000282_090--Hb_002413_010 Hb_001357_310 Hb_001357_310 Hb_010775_030--Hb_001357_310 Hb_002014_010 Hb_002014_010 Hb_010775_030--Hb_002014_010 Hb_006588_060 Hb_006588_060 Hb_010775_030--Hb_006588_060 Hb_000086_420 Hb_000086_420 Hb_010775_030--Hb_000086_420 Hb_171900_090 Hb_171900_090 Hb_010775_030--Hb_171900_090 Hb_010287_020--Hb_000868_120 Hb_006452_180 Hb_006452_180 Hb_010287_020--Hb_006452_180 Hb_001699_010 Hb_001699_010 Hb_010287_020--Hb_001699_010 Hb_033642_120 Hb_033642_120 Hb_010287_020--Hb_033642_120 Hb_000445_060 Hb_000445_060 Hb_010287_020--Hb_000445_060 Hb_003470_040 Hb_003470_040 Hb_000207_200--Hb_003470_040 Hb_002909_040 Hb_002909_040 Hb_000207_200--Hb_002909_040 Hb_000207_200--Hb_000089_210 Hb_000207_200--Hb_033642_120 Hb_029695_080 Hb_029695_080 Hb_000207_200--Hb_029695_080 Hb_060094_020 Hb_060094_020 Hb_004870_050--Hb_060094_020 Hb_003927_040 Hb_003927_040 Hb_004870_050--Hb_003927_040 Hb_000094_090 Hb_000094_090 Hb_004870_050--Hb_000094_090 Hb_004648_090 Hb_004648_090 Hb_004870_050--Hb_004648_090 Hb_000868_120--Hb_000445_060 Hb_000868_120--Hb_033642_120 Hb_000676_330 Hb_000676_330 Hb_000868_120--Hb_000676_330 Hb_001439_220 Hb_001439_220 Hb_000868_120--Hb_001439_220 Hb_000661_120 Hb_000661_120 Hb_000868_120--Hb_000661_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7913 28.1948 32.0237 18.6975 14.8054 9.48133
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5627 18.2175 9.76069 16.2139 15.1896

CAGE analysis