Hb_002110_170

Information

Type -
Description -
Location Contig2110: 146643-147419
Sequence    

Annotation

kegg
ID cic:CICLE_v10002406mg
description hypothetical protein
nr
ID XP_006433894.1
description hypothetical protein CICLE_v10002406mg [Citrus clementina]
swissprot
ID Q9FQA3
description Glutathione transferase GST 23 OS=Zea mays PE=2 SV=1
trembl
ID V4V5B0
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002406mg PE=3 SV=1
Gene Ontology
ID GO:0016740
description glutathione transferase gst 23-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21862: 141860-145884 , PASA_asmbl_21863: 141860-145881 , PASA_asmbl_21864: 143145-145884 , PASA_asmbl_21866: 146693-147671
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002110_170 0.0 - - hypothetical protein CICLE_v10002406mg [Citrus clementina]
2 Hb_002552_010 0.11293405 transcription factor TF Family: DBP protein phosphatase 2c, putative [Ricinus communis]
3 Hb_005532_020 0.1215681311 - - PREDICTED: uncharacterized protein LOC100262861 [Vitis vinifera]
4 Hb_000622_330 0.1215747782 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
5 Hb_005245_140 0.1402621206 - - PREDICTED: ribonuclease 2 [Jatropha curcas]
6 Hb_002740_100 0.1426323909 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
7 Hb_005724_040 0.1480593181 - - hypothetical protein JCGZ_13142 [Jatropha curcas]
8 Hb_010315_100 0.1483503236 - - PREDICTED: uncharacterized protein LOC104420162 [Eucalyptus grandis]
9 Hb_005408_100 0.1524842027 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 14 [Jatropha curcas]
10 Hb_002235_370 0.1545123195 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
11 Hb_010050_020 0.1557338184 - - PREDICTED: uncharacterized protein LOC102601222 [Solanum tuberosum]
12 Hb_003001_130 0.1592771175 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001221_390 0.159410498 - - Phospholipase C 4 precursor, putative [Ricinus communis]
14 Hb_003849_120 0.1595822002 - - PREDICTED: uncharacterized protein LOC100264440 [Vitis vinifera]
15 Hb_000853_330 0.1621881581 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
16 Hb_000635_050 0.1631208933 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
17 Hb_000000_480 0.1632746176 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
18 Hb_017098_040 0.1651335623 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
19 Hb_006120_060 0.1668742986 - - O-acetyltransferase family protein isoform 1 [Theobroma cacao]
20 Hb_000230_360 0.1671853354 - - PREDICTED: BI1-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_002110_170 Hb_002110_170 Hb_002552_010 Hb_002552_010 Hb_002110_170--Hb_002552_010 Hb_005532_020 Hb_005532_020 Hb_002110_170--Hb_005532_020 Hb_000622_330 Hb_000622_330 Hb_002110_170--Hb_000622_330 Hb_005245_140 Hb_005245_140 Hb_002110_170--Hb_005245_140 Hb_002740_100 Hb_002740_100 Hb_002110_170--Hb_002740_100 Hb_005724_040 Hb_005724_040 Hb_002110_170--Hb_005724_040 Hb_002552_010--Hb_005532_020 Hb_001104_150 Hb_001104_150 Hb_002552_010--Hb_001104_150 Hb_003055_070 Hb_003055_070 Hb_002552_010--Hb_003055_070 Hb_093077_010 Hb_093077_010 Hb_002552_010--Hb_093077_010 Hb_010868_040 Hb_010868_040 Hb_002552_010--Hb_010868_040 Hb_105033_010 Hb_105033_010 Hb_005532_020--Hb_105033_010 Hb_001059_060 Hb_001059_060 Hb_005532_020--Hb_001059_060 Hb_003849_120 Hb_003849_120 Hb_005532_020--Hb_003849_120 Hb_009078_020 Hb_009078_020 Hb_005532_020--Hb_009078_020 Hb_010050_020 Hb_010050_020 Hb_000622_330--Hb_010050_020 Hb_000928_120 Hb_000928_120 Hb_000622_330--Hb_000928_120 Hb_006120_060 Hb_006120_060 Hb_000622_330--Hb_006120_060 Hb_002217_080 Hb_002217_080 Hb_000622_330--Hb_002217_080 Hb_000000_480 Hb_000000_480 Hb_000622_330--Hb_000000_480 Hb_004522_030 Hb_004522_030 Hb_000622_330--Hb_004522_030 Hb_000165_090 Hb_000165_090 Hb_005245_140--Hb_000165_090 Hb_091318_010 Hb_091318_010 Hb_005245_140--Hb_091318_010 Hb_004678_030 Hb_004678_030 Hb_005245_140--Hb_004678_030 Hb_000030_020 Hb_000030_020 Hb_005245_140--Hb_000030_020 Hb_010315_100 Hb_010315_100 Hb_005245_140--Hb_010315_100 Hb_002740_100--Hb_005724_040 Hb_001486_100 Hb_001486_100 Hb_002740_100--Hb_001486_100 Hb_000181_230 Hb_000181_230 Hb_002740_100--Hb_000181_230 Hb_006414_010 Hb_006414_010 Hb_002740_100--Hb_006414_010 Hb_005408_100 Hb_005408_100 Hb_002740_100--Hb_005408_100 Hb_000326_080 Hb_000326_080 Hb_002740_100--Hb_000326_080 Hb_005724_040--Hb_000181_230 Hb_001221_390 Hb_001221_390 Hb_005724_040--Hb_001221_390 Hb_007483_120 Hb_007483_120 Hb_005724_040--Hb_007483_120 Hb_002099_060 Hb_002099_060 Hb_005724_040--Hb_002099_060 Hb_002685_160 Hb_002685_160 Hb_005724_040--Hb_002685_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.104292 4.68936 5.93859 8.04271 1.31431 0.292038
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.401333 0.757217 0.112667 2.54112 4.87063

CAGE analysis