Hb_002110_200

Information

Type -
Description -
Location Contig2110: 152338-163256
Sequence    

Annotation

kegg
ID rcu:RCOM_1038380
description chaperone protein DNAj, putative
nr
ID XP_012067940.1
description PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID Q38813
description Chaperone protein dnaJ 1, mitochondrial OS=Arabidopsis thaliana GN=ATJ1 PE=2 SV=2
trembl
ID A0A067KZ12
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15848 PE=3 SV=1
Gene Ontology
ID GO:0005524
description chaperone protein dnaj mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21869: 150256-151642 , PASA_asmbl_21872: 153774-154793 , PASA_asmbl_21873: 156546-163219
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002110_200 0.0 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
2 Hb_000254_050 0.0464844244 - - hypothetical protein VITISV_010510 [Vitis vinifera]
3 Hb_001512_080 0.0558747265 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
4 Hb_000789_230 0.063953729 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
5 Hb_001776_160 0.0656663536 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
6 Hb_027654_050 0.0721269135 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
7 Hb_000453_120 0.0723149424 - - PREDICTED: proteasome subunit alpha type-3 [Jatropha curcas]
8 Hb_007576_170 0.0734457686 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004889_010 0.0741399704 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
10 Hb_017225_020 0.0770297932 - - PREDICTED: protein BRICK 1 [Gossypium raimondii]
11 Hb_001085_120 0.0782607756 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
12 Hb_028515_010 0.0783508486 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
13 Hb_004127_020 0.0795881215 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein isoform X1 [Populus euphratica]
14 Hb_002742_090 0.0800106603 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
15 Hb_000571_020 0.0806675553 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
16 Hb_000261_140 0.0827503619 - - -
17 Hb_002000_140 0.0827628067 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
18 Hb_001484_070 0.083011419 - - conserved hypothetical protein [Ricinus communis]
19 Hb_068056_030 0.0837566985 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
20 Hb_011381_080 0.0848664534 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]

Gene co-expression network

sample Hb_002110_200 Hb_002110_200 Hb_000254_050 Hb_000254_050 Hb_002110_200--Hb_000254_050 Hb_001512_080 Hb_001512_080 Hb_002110_200--Hb_001512_080 Hb_000789_230 Hb_000789_230 Hb_002110_200--Hb_000789_230 Hb_001776_160 Hb_001776_160 Hb_002110_200--Hb_001776_160 Hb_027654_050 Hb_027654_050 Hb_002110_200--Hb_027654_050 Hb_000453_120 Hb_000453_120 Hb_002110_200--Hb_000453_120 Hb_000254_050--Hb_001512_080 Hb_000016_080 Hb_000016_080 Hb_000254_050--Hb_000016_080 Hb_000254_050--Hb_000789_230 Hb_000571_020 Hb_000571_020 Hb_000254_050--Hb_000571_020 Hb_005269_080 Hb_005269_080 Hb_000254_050--Hb_005269_080 Hb_000224_140 Hb_000224_140 Hb_001512_080--Hb_000224_140 Hb_001085_120 Hb_001085_120 Hb_001512_080--Hb_001085_120 Hb_001512_080--Hb_027654_050 Hb_001512_080--Hb_000453_120 Hb_000789_230--Hb_000016_080 Hb_007065_010 Hb_007065_010 Hb_000789_230--Hb_007065_010 Hb_017413_010 Hb_017413_010 Hb_000789_230--Hb_017413_010 Hb_005463_140 Hb_005463_140 Hb_000789_230--Hb_005463_140 Hb_006831_120 Hb_006831_120 Hb_001776_160--Hb_006831_120 Hb_001776_160--Hb_027654_050 Hb_001776_160--Hb_001085_120 Hb_001776_160--Hb_001512_080 Hb_002742_090 Hb_002742_090 Hb_001776_160--Hb_002742_090 Hb_017225_020 Hb_017225_020 Hb_027654_050--Hb_017225_020 Hb_001904_090 Hb_001904_090 Hb_027654_050--Hb_001904_090 Hb_027654_050--Hb_000254_050 Hb_001484_070 Hb_001484_070 Hb_000453_120--Hb_001484_070 Hb_000453_120--Hb_001085_120 Hb_000086_280 Hb_000086_280 Hb_000453_120--Hb_000086_280 Hb_003077_040 Hb_003077_040 Hb_000453_120--Hb_003077_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.5353 0.793839 1.81607 2.6993 1.60343 2.11989
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.45954 6.11068 4.03397 1.98244 2.18899

CAGE analysis