Hb_002110_210

Information

Type -
Description -
Location Contig2110: 163645-165493
Sequence    

Annotation

kegg
ID rcu:RCOM_1038370
description purine transporter, putative
nr
ID XP_002513994.1
description purine transporter, putative [Ricinus communis]
swissprot
ID Q9FZ95
description Purine permease 3 OS=Arabidopsis thaliana GN=PUP3 PE=2 SV=1
trembl
ID B9RJS5
description Purine transporter, putative OS=Ricinus communis GN=RCOM_1038370 PE=4 SV=1
Gene Ontology
ID GO:0016021
description purine permease 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21875: 163651-165416
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002110_210 0.0 - - purine transporter, putative [Ricinus communis]
2 Hb_002241_020 0.0664066129 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
3 Hb_002735_010 0.0773679918 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein 44 [Prunus mume]
4 Hb_004218_230 0.1026950576 - - Peptide transporter, putative [Ricinus communis]
5 Hb_015473_010 0.1059079676 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
6 Hb_005147_020 0.1062104154 - - PREDICTED: uncharacterized protein LOC105629671 [Jatropha curcas]
7 Hb_000127_070 0.1079776009 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
8 Hb_005380_030 0.1090051593 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase B120 isoform X2 [Jatropha curcas]
9 Hb_000504_050 0.1107481375 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
10 Hb_000152_250 0.1224304975 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
11 Hb_000987_080 0.1279357659 - - light-inducible protein atls1, putative [Ricinus communis]
12 Hb_017661_020 0.1284100418 - - hypothetical protein JCGZ_11176 [Jatropha curcas]
13 Hb_027445_080 0.1343253018 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
14 Hb_000316_080 0.1382193357 - - ENTH/VHS family protein [Theobroma cacao]
15 Hb_001976_120 0.1388466883 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
16 Hb_140848_010 0.1416962527 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
17 Hb_013691_040 0.1450661724 - - hypothetical protein B456_001G045900 [Gossypium raimondii]
18 Hb_000922_290 0.1461039788 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]
19 Hb_000703_320 0.1471140125 - - receptor-kinase, putative [Ricinus communis]
20 Hb_005203_010 0.1513650673 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]

Gene co-expression network

sample Hb_002110_210 Hb_002110_210 Hb_002241_020 Hb_002241_020 Hb_002110_210--Hb_002241_020 Hb_002735_010 Hb_002735_010 Hb_002110_210--Hb_002735_010 Hb_004218_230 Hb_004218_230 Hb_002110_210--Hb_004218_230 Hb_015473_010 Hb_015473_010 Hb_002110_210--Hb_015473_010 Hb_005147_020 Hb_005147_020 Hb_002110_210--Hb_005147_020 Hb_000127_070 Hb_000127_070 Hb_002110_210--Hb_000127_070 Hb_002241_020--Hb_002735_010 Hb_000987_080 Hb_000987_080 Hb_002241_020--Hb_000987_080 Hb_005380_030 Hb_005380_030 Hb_002241_020--Hb_005380_030 Hb_002241_020--Hb_005147_020 Hb_002241_020--Hb_015473_010 Hb_000152_250 Hb_000152_250 Hb_002735_010--Hb_000152_250 Hb_002735_010--Hb_015473_010 Hb_140848_010 Hb_140848_010 Hb_002735_010--Hb_140848_010 Hb_002735_010--Hb_000127_070 Hb_004218_230--Hb_000127_070 Hb_000504_050 Hb_000504_050 Hb_004218_230--Hb_000504_050 Hb_004218_230--Hb_002735_010 Hb_027445_080 Hb_027445_080 Hb_004218_230--Hb_027445_080 Hb_017661_020 Hb_017661_020 Hb_004218_230--Hb_017661_020 Hb_015473_010--Hb_000152_250 Hb_000521_210 Hb_000521_210 Hb_015473_010--Hb_000521_210 Hb_003439_090 Hb_003439_090 Hb_015473_010--Hb_003439_090 Hb_001823_070 Hb_001823_070 Hb_015473_010--Hb_001823_070 Hb_000101_140 Hb_000101_140 Hb_005147_020--Hb_000101_140 Hb_000431_180 Hb_000431_180 Hb_005147_020--Hb_000431_180 Hb_024857_010 Hb_024857_010 Hb_005147_020--Hb_024857_010 Hb_000656_370 Hb_000656_370 Hb_005147_020--Hb_000656_370 Hb_000127_070--Hb_017661_020 Hb_000127_070--Hb_005147_020 Hb_004590_010 Hb_004590_010 Hb_000127_070--Hb_004590_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.165468 71.7494 1.6174 53.9891 0.271207 0.177689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.17184 0.0540738 0 30.1784 3.26869

CAGE analysis