Hb_002110_240

Information

Type -
Description -
Location Contig2110: 202179-203204
Sequence    

Annotation

kegg
ID rcu:RCOM_1037910
description clathrin assembly protein, putative (EC:1.3.1.74)
nr
ID XP_002513988.1
description clathrin assembly protein, putative [Ricinus communis]
swissprot
ID Q8L936
description Putative clathrin assembly protein At4g40080 OS=Arabidopsis thaliana GN=At4g40080 PE=2 SV=2
trembl
ID B9RJR9
description Clathrin assembly protein, putative OS=Ricinus communis GN=RCOM_1037910 PE=4 SV=1
Gene Ontology
ID GO:0005543
description clathrin assembly protein at4g40080

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21881: 202730-203119
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002110_240 0.0 - - clathrin assembly protein, putative [Ricinus communis]
2 Hb_002205_010 0.1163647545 - - hypothetical protein JCGZ_03337 [Jatropha curcas]
3 Hb_008173_030 0.1360808631 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
4 Hb_000256_130 0.1664296024 - - hypothetical protein 21 [Hevea brasiliensis]
5 Hb_020400_040 0.1707302415 - - PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Jatropha curcas]
6 Hb_000343_180 0.1722810943 - - NDWp3 [Podospora anserina]
7 Hb_009233_030 0.179029736 - - protein binding protein, putative [Ricinus communis]
8 Hb_000634_070 0.1814377368 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
9 Hb_006909_060 0.1835856921 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Solanum lycopersicum]
10 Hb_005663_070 0.1867861075 - - dehydrin protein [Manihot esculenta]
11 Hb_001123_200 0.1923459796 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001472_130 0.1978417069 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
13 Hb_003605_240 0.1996073155 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
14 Hb_000179_240 0.2025639872 - - PREDICTED: threonine synthase 1, chloroplastic [Jatropha curcas]
15 Hb_002572_050 0.2033707552 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
16 Hb_000638_210 0.2036843664 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
17 Hb_006096_010 0.2055989703 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000672_150 0.205776231 - - Patatin T5 precursor, putative [Ricinus communis]
19 Hb_000008_110 0.2128423427 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Gossypium raimondii]
20 Hb_171900_020 0.2148188628 - - PREDICTED: uncharacterized protein LOC105643207 [Jatropha curcas]

Gene co-expression network

sample Hb_002110_240 Hb_002110_240 Hb_002205_010 Hb_002205_010 Hb_002110_240--Hb_002205_010 Hb_008173_030 Hb_008173_030 Hb_002110_240--Hb_008173_030 Hb_000256_130 Hb_000256_130 Hb_002110_240--Hb_000256_130 Hb_020400_040 Hb_020400_040 Hb_002110_240--Hb_020400_040 Hb_000343_180 Hb_000343_180 Hb_002110_240--Hb_000343_180 Hb_009233_030 Hb_009233_030 Hb_002110_240--Hb_009233_030 Hb_002205_010--Hb_020400_040 Hb_000179_240 Hb_000179_240 Hb_002205_010--Hb_000179_240 Hb_002205_010--Hb_000256_130 Hb_001472_130 Hb_001472_130 Hb_002205_010--Hb_001472_130 Hb_001123_200 Hb_001123_200 Hb_002205_010--Hb_001123_200 Hb_000649_240 Hb_000649_240 Hb_008173_030--Hb_000649_240 Hb_000868_100 Hb_000868_100 Hb_008173_030--Hb_000868_100 Hb_008173_030--Hb_000343_180 Hb_008173_030--Hb_002205_010 Hb_000638_210 Hb_000638_210 Hb_008173_030--Hb_000638_210 Hb_000023_250 Hb_000023_250 Hb_000256_130--Hb_000023_250 Hb_000364_040 Hb_000364_040 Hb_000256_130--Hb_000364_040 Hb_000976_280 Hb_000976_280 Hb_000256_130--Hb_000976_280 Hb_012107_010 Hb_012107_010 Hb_000256_130--Hb_012107_010 Hb_000634_070 Hb_000634_070 Hb_000256_130--Hb_000634_070 Hb_005663_070 Hb_005663_070 Hb_000256_130--Hb_005663_070 Hb_006096_010 Hb_006096_010 Hb_020400_040--Hb_006096_010 Hb_012760_010 Hb_012760_010 Hb_020400_040--Hb_012760_010 Hb_156850_080 Hb_156850_080 Hb_020400_040--Hb_156850_080 Hb_020400_040--Hb_001123_200 Hb_000802_110 Hb_000802_110 Hb_000343_180--Hb_000802_110 Hb_000732_250 Hb_000732_250 Hb_000343_180--Hb_000732_250 Hb_000975_360 Hb_000975_360 Hb_000343_180--Hb_000975_360 Hb_007558_020 Hb_007558_020 Hb_000343_180--Hb_007558_020 Hb_009233_030--Hb_005663_070 Hb_009233_030--Hb_000256_130 Hb_006909_060 Hb_006909_060 Hb_009233_030--Hb_006909_060 Hb_000008_110 Hb_000008_110 Hb_009233_030--Hb_000008_110 Hb_009233_030--Hb_000023_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.26191 25.6841 5.08936 5.28097 0.601138 1.24308
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.20318 10.7329 5.97915 3.84805 0.237373

CAGE analysis