Hb_002111_060

Information

Type -
Description -
Location Contig2111: 62757-79886
Sequence    

Annotation

kegg
ID pop:POPTR_0006s06040g
description leucine-rich repeat family protein
nr
ID XP_012081140.1
description PREDICTED: toll-like receptor 13 [Jatropha curcas]
swissprot
ID Q8N1E6
description F-box/LRR-repeat protein 14 OS=Homo sapiens GN=FBXL14 PE=1 SV=1
trembl
ID A0A067KEG9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16991 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21893: 62776-79614 , PASA_asmbl_21896: 73739-74187 , PASA_asmbl_21898: 71660-71955
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002111_060 0.0 - - PREDICTED: toll-like receptor 13 [Jatropha curcas]
2 Hb_000645_120 0.1144120493 - - PREDICTED: ubiquitin-conjugating enzyme E2 32 [Jatropha curcas]
3 Hb_009620_050 0.1155059493 - - PREDICTED: protein unc-45 homolog A [Jatropha curcas]
4 Hb_003430_060 0.1158079141 - - PREDICTED: potassium transporter 23 isoform X2 [Elaeis guineensis]
5 Hb_000086_200 0.118871903 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_078477_050 0.1219664327 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105648332 isoform X1 [Jatropha curcas]
7 Hb_000836_270 0.1227884614 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
8 Hb_027028_020 0.1240738666 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
9 Hb_005321_020 0.1270070519 - - splicing factor-related family protein [Populus trichocarpa]
10 Hb_000236_380 0.1274235109 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
11 Hb_000009_480 0.1299478834 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]
12 Hb_002400_470 0.1320180184 - - PREDICTED: calcium uptake protein 1, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_002248_140 0.1341529306 - - acetylglucosaminyltransferase, putative [Ricinus communis]
14 Hb_008864_110 0.1342214145 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
15 Hb_001140_350 0.1342894928 - - PREDICTED: uncharacterized protein LOC105648465 [Jatropha curcas]
16 Hb_003531_060 0.1352161551 - - unnamed protein product [Coffea canephora]
17 Hb_000031_150 0.135539335 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
18 Hb_001047_030 0.1357554103 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
19 Hb_000011_190 0.1358554307 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6 [Jatropha curcas]
20 Hb_000563_640 0.1366053618 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]

Gene co-expression network

sample Hb_002111_060 Hb_002111_060 Hb_000645_120 Hb_000645_120 Hb_002111_060--Hb_000645_120 Hb_009620_050 Hb_009620_050 Hb_002111_060--Hb_009620_050 Hb_003430_060 Hb_003430_060 Hb_002111_060--Hb_003430_060 Hb_000086_200 Hb_000086_200 Hb_002111_060--Hb_000086_200 Hb_078477_050 Hb_078477_050 Hb_002111_060--Hb_078477_050 Hb_000836_270 Hb_000836_270 Hb_002111_060--Hb_000836_270 Hb_000283_070 Hb_000283_070 Hb_000645_120--Hb_000283_070 Hb_001140_350 Hb_001140_350 Hb_000645_120--Hb_001140_350 Hb_008864_110 Hb_008864_110 Hb_000645_120--Hb_008864_110 Hb_005321_020 Hb_005321_020 Hb_000645_120--Hb_005321_020 Hb_000510_310 Hb_000510_310 Hb_000645_120--Hb_000510_310 Hb_003124_130 Hb_003124_130 Hb_000645_120--Hb_003124_130 Hb_000563_640 Hb_000563_640 Hb_009620_050--Hb_000563_640 Hb_006831_110 Hb_006831_110 Hb_009620_050--Hb_006831_110 Hb_009620_050--Hb_005321_020 Hb_000107_500 Hb_000107_500 Hb_009620_050--Hb_000107_500 Hb_002174_020 Hb_002174_020 Hb_009620_050--Hb_002174_020 Hb_002042_140 Hb_002042_140 Hb_009620_050--Hb_002042_140 Hb_007508_080 Hb_007508_080 Hb_003430_060--Hb_007508_080 Hb_003430_060--Hb_005321_020 Hb_000574_100 Hb_000574_100 Hb_003430_060--Hb_000574_100 Hb_002111_070 Hb_002111_070 Hb_003430_060--Hb_002111_070 Hb_010697_040 Hb_010697_040 Hb_003430_060--Hb_010697_040 Hb_003430_060--Hb_000563_640 Hb_000197_210 Hb_000197_210 Hb_000086_200--Hb_000197_210 Hb_176152_010 Hb_176152_010 Hb_000086_200--Hb_176152_010 Hb_000025_090 Hb_000025_090 Hb_000086_200--Hb_000025_090 Hb_000236_380 Hb_000236_380 Hb_000086_200--Hb_000236_380 Hb_000123_090 Hb_000123_090 Hb_000086_200--Hb_000123_090 Hb_008177_030 Hb_008177_030 Hb_078477_050--Hb_008177_030 Hb_001486_070 Hb_001486_070 Hb_078477_050--Hb_001486_070 Hb_078477_050--Hb_001140_350 Hb_001366_210 Hb_001366_210 Hb_078477_050--Hb_001366_210 Hb_080313_010 Hb_080313_010 Hb_078477_050--Hb_080313_010 Hb_000836_270--Hb_000645_120 Hb_000836_270--Hb_001140_350 Hb_000836_270--Hb_000510_310 Hb_000215_190 Hb_000215_190 Hb_000836_270--Hb_000215_190 Hb_001454_280 Hb_001454_280 Hb_000836_270--Hb_001454_280 Hb_000836_270--Hb_005321_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
89.2033 48.7591 13.7658 67.2839 68.6645 66.3746
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.5373 19.0033 42.5431 27.1232 16.9045

CAGE analysis