Hb_002119_040

Information

Type -
Description -
Location Contig2119: 46116-49807
Sequence    

Annotation

kegg
ID rcu:RCOM_1149420
description receptor protein kinase, putative (EC:2.7.10.2)
nr
ID XP_002527538.1
description receptor protein kinase, putative [Ricinus communis]
swissprot
ID P43298
description Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1
trembl
ID B9SNG9
description Receptor protein kinase, putative OS=Ricinus communis GN=RCOM_1149420 PE=3 SV=1
Gene Ontology
ID GO:0005576
description probable receptor protein kinase tmk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21919: 47586-47864 , PASA_asmbl_21920: 48370-49405
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002119_040 0.0 - - receptor protein kinase, putative [Ricinus communis]
2 Hb_001491_040 0.1207392512 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
3 Hb_003647_040 0.1239075604 - - conserved hypothetical protein [Ricinus communis]
4 Hb_012727_010 0.1373438432 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
5 Hb_002324_040 0.1493464311 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]
6 Hb_000002_360 0.150017605 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
7 Hb_002000_090 0.1511498766 - - 60S ribosomal protein L3B [Hevea brasiliensis]
8 Hb_000866_320 0.1546625072 - - receptor protein kinase, putative [Ricinus communis]
9 Hb_003025_150 0.1589944841 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005694_180 0.1679555223 - - PREDICTED: cytochrome b5 [Jatropha curcas]
11 Hb_006483_060 0.1691841101 - - PREDICTED: protein RALF-like 34 [Jatropha curcas]
12 Hb_000062_490 0.1723455446 - - PREDICTED: lipoxygenase 6, chloroplastic [Jatropha curcas]
13 Hb_001054_090 0.1725460954 - - Potassium channel SKOR, putative [Ricinus communis]
14 Hb_003529_240 0.1728823951 transcription factor TF Family: AP2 PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2 [Gossypium raimondii]
15 Hb_002999_080 0.173304052 transcription factor TF Family: G2-like PREDICTED: accessory gland protein Acp36DE [Jatropha curcas]
16 Hb_127416_010 0.1745536138 - - LysM domain GPI-anchored protein 2 precursor, putative [Ricinus communis]
17 Hb_007044_220 0.1774413113 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
18 Hb_000465_260 0.1788336278 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
19 Hb_183086_070 0.1805255146 - - PREDICTED: mitochondrial chaperone BCS1-like [Jatropha curcas]
20 Hb_000692_030 0.181828809 - - nucleoredoxin, putative [Ricinus communis]

Gene co-expression network

sample Hb_002119_040 Hb_002119_040 Hb_001491_040 Hb_001491_040 Hb_002119_040--Hb_001491_040 Hb_003647_040 Hb_003647_040 Hb_002119_040--Hb_003647_040 Hb_012727_010 Hb_012727_010 Hb_002119_040--Hb_012727_010 Hb_002324_040 Hb_002324_040 Hb_002119_040--Hb_002324_040 Hb_000002_360 Hb_000002_360 Hb_002119_040--Hb_000002_360 Hb_002000_090 Hb_002000_090 Hb_002119_040--Hb_002000_090 Hb_001491_040--Hb_003647_040 Hb_001491_040--Hb_002000_090 Hb_005694_180 Hb_005694_180 Hb_001491_040--Hb_005694_180 Hb_002235_410 Hb_002235_410 Hb_001491_040--Hb_002235_410 Hb_004586_330 Hb_004586_330 Hb_001491_040--Hb_004586_330 Hb_003647_040--Hb_012727_010 Hb_000032_430 Hb_000032_430 Hb_003647_040--Hb_000032_430 Hb_000866_320 Hb_000866_320 Hb_003647_040--Hb_000866_320 Hb_000189_070 Hb_000189_070 Hb_003647_040--Hb_000189_070 Hb_012727_010--Hb_002324_040 Hb_003025_150 Hb_003025_150 Hb_012727_010--Hb_003025_150 Hb_001178_080 Hb_001178_080 Hb_012727_010--Hb_001178_080 Hb_001832_210 Hb_001832_210 Hb_012727_010--Hb_001832_210 Hb_003579_040 Hb_003579_040 Hb_012727_010--Hb_003579_040 Hb_002324_040--Hb_003025_150 Hb_002324_050 Hb_002324_050 Hb_002324_040--Hb_002324_050 Hb_002324_040--Hb_003579_040 Hb_064047_010 Hb_064047_010 Hb_002324_040--Hb_064047_010 Hb_004032_250 Hb_004032_250 Hb_002324_040--Hb_004032_250 Hb_026549_050 Hb_026549_050 Hb_000002_360--Hb_026549_050 Hb_000832_280 Hb_000832_280 Hb_000002_360--Hb_000832_280 Hb_000002_360--Hb_000866_320 Hb_001433_160 Hb_001433_160 Hb_000002_360--Hb_001433_160 Hb_003387_050 Hb_003387_050 Hb_000002_360--Hb_003387_050 Hb_001922_060 Hb_001922_060 Hb_000002_360--Hb_001922_060 Hb_002284_080 Hb_002284_080 Hb_002000_090--Hb_002284_080 Hb_001353_020 Hb_001353_020 Hb_002000_090--Hb_001353_020 Hb_012760_090 Hb_012760_090 Hb_002000_090--Hb_012760_090 Hb_034507_090 Hb_034507_090 Hb_002000_090--Hb_034507_090 Hb_000735_140 Hb_000735_140 Hb_002000_090--Hb_000735_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.557761 6.26351 5.07424 11.4173 0.57741 0.0349238
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.77113 0.212393 0.930337 5.29982 1.4054

CAGE analysis