Hb_002119_060

Information

Type transcription factor
Description TF Family: Orphans
Location Contig2119: 105505-113269
Sequence    

Annotation

kegg
ID rcu:RCOM_1149450
description histidine kinase 1, 2, 3 plant, putative (EC:2.7.13.3)
nr
ID XP_002527541.1
description histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
swissprot
ID Q9C5U0
description Histidine kinase 4 OS=Arabidopsis thaliana GN=AHK4 PE=1 SV=1
trembl
ID B9SNH2
description Histidine kinase 1, 2, 3 plant, putative OS=Ricinus communis GN=RCOM_1149450 PE=4 SV=1
Gene Ontology
ID GO:0005783
description cytokinin response 1 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21921: 105908-111424 , PASA_asmbl_21922: 112909-113098
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002119_060 0.0 transcription factor TF Family: Orphans histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
2 Hb_009382_020 0.0985191129 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
3 Hb_031089_010 0.0993579758 - - DNA binding protein, putative [Ricinus communis]
4 Hb_000836_360 0.1077924493 - - PREDICTED: uncharacterized protein LOC105642935 isoform X2 [Jatropha curcas]
5 Hb_002026_100 0.1078049271 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 2 isoform X2 [Jatropha curcas]
6 Hb_006400_040 0.1082667793 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
7 Hb_000392_070 0.1120816869 - - catalytic, putative [Ricinus communis]
8 Hb_002686_270 0.1127557537 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004055_010 0.1133515026 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
10 Hb_000483_350 0.1134130593 - - PREDICTED: uncharacterized protein LOC105632381 [Jatropha curcas]
11 Hb_002477_160 0.1141537178 - - hypothetical protein L484_013453 [Morus notabilis]
12 Hb_001047_020 0.1149012258 - - -
13 Hb_001930_050 0.1151613162 - - Serine acetyltransferase 3, mitochondrial precursor, putative [Ricinus communis]
14 Hb_000179_130 0.1155671357 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
15 Hb_005324_010 0.1175820923 - - Chaperone protein dnaJ, putative [Ricinus communis]
16 Hb_010381_070 0.1187566573 - - PREDICTED: protein STU1-like [Jatropha curcas]
17 Hb_000120_050 0.1190445003 - - PREDICTED: protein ELF4-LIKE 1 [Jatropha curcas]
18 Hb_000500_040 0.1197424862 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000056_100 0.1198143134 - - PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
20 Hb_004218_150 0.1202816933 - - electron transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_002119_060 Hb_002119_060 Hb_009382_020 Hb_009382_020 Hb_002119_060--Hb_009382_020 Hb_031089_010 Hb_031089_010 Hb_002119_060--Hb_031089_010 Hb_000836_360 Hb_000836_360 Hb_002119_060--Hb_000836_360 Hb_002026_100 Hb_002026_100 Hb_002119_060--Hb_002026_100 Hb_006400_040 Hb_006400_040 Hb_002119_060--Hb_006400_040 Hb_000392_070 Hb_000392_070 Hb_002119_060--Hb_000392_070 Hb_000300_620 Hb_000300_620 Hb_009382_020--Hb_000300_620 Hb_000138_040 Hb_000138_040 Hb_009382_020--Hb_000138_040 Hb_000483_350 Hb_000483_350 Hb_009382_020--Hb_000483_350 Hb_001157_030 Hb_001157_030 Hb_009382_020--Hb_001157_030 Hb_005062_070 Hb_005062_070 Hb_009382_020--Hb_005062_070 Hb_002890_280 Hb_002890_280 Hb_009382_020--Hb_002890_280 Hb_133271_020 Hb_133271_020 Hb_031089_010--Hb_133271_020 Hb_001030_120 Hb_001030_120 Hb_031089_010--Hb_001030_120 Hb_000017_120 Hb_000017_120 Hb_031089_010--Hb_000017_120 Hb_134226_010 Hb_134226_010 Hb_031089_010--Hb_134226_010 Hb_158092_070 Hb_158092_070 Hb_031089_010--Hb_158092_070 Hb_159558_030 Hb_159558_030 Hb_031089_010--Hb_159558_030 Hb_000953_010 Hb_000953_010 Hb_000836_360--Hb_000953_010 Hb_002307_100 Hb_002307_100 Hb_000836_360--Hb_002307_100 Hb_002477_160 Hb_002477_160 Hb_000836_360--Hb_002477_160 Hb_001516_100 Hb_001516_100 Hb_000836_360--Hb_001516_100 Hb_000184_130 Hb_000184_130 Hb_000836_360--Hb_000184_130 Hb_005324_010 Hb_005324_010 Hb_000836_360--Hb_005324_010 Hb_012634_010 Hb_012634_010 Hb_002026_100--Hb_012634_010 Hb_000152_820 Hb_000152_820 Hb_002026_100--Hb_000152_820 Hb_000977_070 Hb_000977_070 Hb_002026_100--Hb_000977_070 Hb_010175_020 Hb_010175_020 Hb_002026_100--Hb_010175_020 Hb_001736_040 Hb_001736_040 Hb_002026_100--Hb_001736_040 Hb_000406_220 Hb_000406_220 Hb_002026_100--Hb_000406_220 Hb_002027_260 Hb_002027_260 Hb_006400_040--Hb_002027_260 Hb_001584_330 Hb_001584_330 Hb_006400_040--Hb_001584_330 Hb_001623_420 Hb_001623_420 Hb_006400_040--Hb_001623_420 Hb_005306_110 Hb_005306_110 Hb_006400_040--Hb_005306_110 Hb_006400_040--Hb_012634_010 Hb_000340_510 Hb_000340_510 Hb_006400_040--Hb_000340_510 Hb_004218_150 Hb_004218_150 Hb_000392_070--Hb_004218_150 Hb_000392_070--Hb_006400_040 Hb_000204_040 Hb_000204_040 Hb_000392_070--Hb_000204_040 Hb_000392_070--Hb_005306_110 Hb_008725_250 Hb_008725_250 Hb_000392_070--Hb_008725_250 Hb_000943_070 Hb_000943_070 Hb_000392_070--Hb_000943_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.8338 14.5299 1.35384 12.6795 22.7793 28.0946
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.0225 19.5108 31.0761 11.0423 2.34705

CAGE analysis