Hb_002119_090

Information

Type -
Description -
Location Contig2119: 137075-141851
Sequence    

Annotation

kegg
ID rcu:RCOM_1149980
description protein binding protein, putative
nr
ID XP_012072368.1
description PREDICTED: protein OBERON 3 [Jatropha curcas]
swissprot
ID Q94B71
description Protein OBERON 3 OS=Arabidopsis thaliana GN=OBE3 PE=1 SV=1
trembl
ID A0A067L106
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04808 PE=4 SV=1
Gene Ontology
ID GO:0001708
description protein oberon 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21928: 137512-141875
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002119_090 0.0 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
2 Hb_004785_030 0.0514058851 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
3 Hb_000700_060 0.0525254604 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
4 Hb_000069_130 0.075055954 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
5 Hb_006738_050 0.0752897336 - - PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]
6 Hb_001257_100 0.0775594901 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
7 Hb_002284_170 0.0814382724 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
8 Hb_007017_070 0.0815487646 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
9 Hb_000059_020 0.0820516469 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
10 Hb_001410_130 0.083393375 - - hypothetical protein POPTR_0001s10880g [Populus trichocarpa]
11 Hb_000649_250 0.0846589608 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
12 Hb_011249_060 0.0849768128 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
13 Hb_000197_030 0.0866955339 - - hypothetical protein RCOM_1447500 [Ricinus communis]
14 Hb_044653_020 0.0873485686 transcription factor, desease resistance TF Family: GNAT, Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
15 Hb_000205_240 0.0876351038 - - ubiquitin-protein ligase, putative [Ricinus communis]
16 Hb_003604_050 0.0880945197 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
17 Hb_002903_140 0.0886116741 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
18 Hb_004517_020 0.0887123162 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
19 Hb_000134_340 0.090277581 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 5 [Jatropha curcas]
20 Hb_004410_070 0.0905757796 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_002119_090 Hb_002119_090 Hb_004785_030 Hb_004785_030 Hb_002119_090--Hb_004785_030 Hb_000700_060 Hb_000700_060 Hb_002119_090--Hb_000700_060 Hb_000069_130 Hb_000069_130 Hb_002119_090--Hb_000069_130 Hb_006738_050 Hb_006738_050 Hb_002119_090--Hb_006738_050 Hb_001257_100 Hb_001257_100 Hb_002119_090--Hb_001257_100 Hb_002284_170 Hb_002284_170 Hb_002119_090--Hb_002284_170 Hb_004785_030--Hb_000700_060 Hb_005188_040 Hb_005188_040 Hb_004785_030--Hb_005188_040 Hb_044653_020 Hb_044653_020 Hb_004785_030--Hb_044653_020 Hb_003604_050 Hb_003604_050 Hb_004785_030--Hb_003604_050 Hb_020805_150 Hb_020805_150 Hb_004785_030--Hb_020805_150 Hb_000700_060--Hb_006738_050 Hb_000700_060--Hb_002284_170 Hb_004410_070 Hb_004410_070 Hb_000700_060--Hb_004410_070 Hb_000059_020 Hb_000059_020 Hb_000700_060--Hb_000059_020 Hb_003912_040 Hb_003912_040 Hb_000069_130--Hb_003912_040 Hb_000402_230 Hb_000402_230 Hb_000069_130--Hb_000402_230 Hb_000809_160 Hb_000809_160 Hb_000069_130--Hb_000809_160 Hb_001089_050 Hb_001089_050 Hb_000069_130--Hb_001089_050 Hb_002374_290 Hb_002374_290 Hb_000069_130--Hb_002374_290 Hb_002542_130 Hb_002542_130 Hb_000069_130--Hb_002542_130 Hb_006738_050--Hb_004410_070 Hb_000205_240 Hb_000205_240 Hb_006738_050--Hb_000205_240 Hb_007017_070 Hb_007017_070 Hb_006738_050--Hb_007017_070 Hb_004899_040 Hb_004899_040 Hb_006738_050--Hb_004899_040 Hb_000671_080 Hb_000671_080 Hb_001257_100--Hb_000671_080 Hb_000926_150 Hb_000926_150 Hb_001257_100--Hb_000926_150 Hb_026198_060 Hb_026198_060 Hb_001257_100--Hb_026198_060 Hb_002812_010 Hb_002812_010 Hb_001257_100--Hb_002812_010 Hb_000649_250 Hb_000649_250 Hb_001257_100--Hb_000649_250 Hb_000958_150 Hb_000958_150 Hb_002284_170--Hb_000958_150 Hb_002092_070 Hb_002092_070 Hb_002284_170--Hb_002092_070 Hb_004429_010 Hb_004429_010 Hb_002284_170--Hb_004429_010 Hb_000949_020 Hb_000949_020 Hb_002284_170--Hb_000949_020 Hb_009252_050 Hb_009252_050 Hb_002284_170--Hb_009252_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.46049 30.5878 13.5159 14.3173 11.5627 10.5507
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.84675 4.87217 6.84731 11.244 8.19994

CAGE analysis