Hb_002119_150

Information

Type -
Description -
Location Contig2119: 196910-204025
Sequence    

Annotation

kegg
ID pop:POPTR_0008s13870g
description POPTRDRAFT_1085232; hypothetical protein
nr
ID XP_002312482.2
description hypothetical protein POPTR_0008s13870g [Populus trichocarpa]
swissprot
ID Q8H129
description Purple acid phosphatase 3 OS=Arabidopsis thaliana GN=PAP3 PE=2 SV=1
trembl
ID A0A0D3HMX2
description Uncharacterized protein OS=Oryza barthii PE=4 SV=1
Gene Ontology
ID GO:0003993
description purple acid phosphatase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21938: 196372-200555 , PASA_asmbl_21939: 197086-200555 , PASA_asmbl_21940: 201458-203838
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002119_150 0.0 - - hypothetical protein POPTR_0008s13870g [Populus trichocarpa]
2 Hb_004837_080 0.0584526346 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46 [Jatropha curcas]
3 Hb_000254_080 0.0679018377 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
4 Hb_001269_540 0.074695806 - - hypothetical protein VITISV_038016 [Vitis vinifera]
5 Hb_000538_110 0.0808625737 - - sucrose synthase 1 [Hevea brasiliensis]
6 Hb_000260_520 0.0817881892 - - receptor protein kinase, putative [Ricinus communis]
7 Hb_080797_010 0.084526611 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
8 Hb_005066_040 0.085552682 - - Reticuline oxidase precursor, putative [Ricinus communis]
9 Hb_000122_230 0.0867906908 - - laccase, putative [Ricinus communis]
10 Hb_140595_020 0.0910692037 - - PREDICTED: vegetative cell wall protein gp1-like [Solanum lycopersicum]
11 Hb_001488_160 0.0912923365 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
12 Hb_008518_060 0.0932590413 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
13 Hb_000230_490 0.095251103 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007620_020 0.0983903087 - - PREDICTED: cationic amino acid transporter 7, chloroplastic-like isoform X1 [Jatropha curcas]
15 Hb_005062_100 0.0999827935 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
16 Hb_000029_210 0.102208262 - - protein binding protein, putative [Ricinus communis]
17 Hb_001097_030 0.1026385785 - - nuclear transport factor, putative [Ricinus communis]
18 Hb_000739_280 0.1044146944 - - alcohol dehydrogenase, putative [Ricinus communis]
19 Hb_000997_370 0.1075250606 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
20 Hb_001104_070 0.1095710301 - - hypothetical protein SORBIDRAFT_10g024640 [Sorghum bicolor]

Gene co-expression network

sample Hb_002119_150 Hb_002119_150 Hb_004837_080 Hb_004837_080 Hb_002119_150--Hb_004837_080 Hb_000254_080 Hb_000254_080 Hb_002119_150--Hb_000254_080 Hb_001269_540 Hb_001269_540 Hb_002119_150--Hb_001269_540 Hb_000538_110 Hb_000538_110 Hb_002119_150--Hb_000538_110 Hb_000260_520 Hb_000260_520 Hb_002119_150--Hb_000260_520 Hb_080797_010 Hb_080797_010 Hb_002119_150--Hb_080797_010 Hb_004837_080--Hb_000254_080 Hb_004837_080--Hb_001269_540 Hb_004837_080--Hb_080797_010 Hb_007620_020 Hb_007620_020 Hb_004837_080--Hb_007620_020 Hb_000122_230 Hb_000122_230 Hb_004837_080--Hb_000122_230 Hb_000254_080--Hb_000122_230 Hb_000254_080--Hb_001269_540 Hb_000254_080--Hb_080797_010 Hb_000997_370 Hb_000997_370 Hb_000254_080--Hb_000997_370 Hb_001269_540--Hb_080797_010 Hb_000230_490 Hb_000230_490 Hb_001269_540--Hb_000230_490 Hb_140595_020 Hb_140595_020 Hb_001269_540--Hb_140595_020 Hb_001097_030 Hb_001097_030 Hb_000538_110--Hb_001097_030 Hb_011214_080 Hb_011214_080 Hb_000538_110--Hb_011214_080 Hb_005062_100 Hb_005062_100 Hb_000538_110--Hb_005062_100 Hb_000029_210 Hb_000029_210 Hb_000538_110--Hb_000029_210 Hb_012760_120 Hb_012760_120 Hb_000538_110--Hb_012760_120 Hb_000260_520--Hb_140595_020 Hb_001104_070 Hb_001104_070 Hb_000260_520--Hb_001104_070 Hb_000260_520--Hb_005062_100 Hb_140595_030 Hb_140595_030 Hb_000260_520--Hb_140595_030 Hb_018487_040 Hb_018487_040 Hb_000260_520--Hb_018487_040 Hb_001097_140 Hb_001097_140 Hb_080797_010--Hb_001097_140 Hb_080797_010--Hb_000122_230 Hb_080797_010--Hb_000230_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.77454 3.51616 14.8031 0 0.00745633
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.143782 0.0424275 0 0.876202 28.2176

CAGE analysis