Hb_002121_030

Information

Type -
Description -
Location Contig2121: 99087-100720
Sequence    

Annotation

kegg
ID tcc:TCM_016746
description Ribonuclease P protein subunit P38-related isoform 1
nr
ID XP_007040935.1
description Ribonuclease P protein subunit P38-related isoform 1 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061G773
description Ribonuclease P protein subunit P38-related isoform 1 OS=Theobroma cacao GN=TCM_016746 PE=4 SV=1
Gene Ontology
ID GO:0015996
description ribonuclease p protein subunit p38-related isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21998: 99048-112594
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002121_030 0.0 - - Ribonuclease P protein subunit P38-related isoform 1 [Theobroma cacao]
2 Hb_001369_590 0.0692741247 transcription factor TF Family: MYB hypothetical protein POPTR_0015s14600g [Populus trichocarpa]
3 Hb_000051_150 0.0718800348 - - hypothetical protein CICLE_v10003316mg [Citrus clementina]
4 Hb_000809_220 0.072845873 - - PREDICTED: 3-ketodihydrosphingosine reductase [Jatropha curcas]
5 Hb_000152_650 0.0737841545 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
6 Hb_054615_010 0.0803134568 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
7 Hb_005365_040 0.0811755253 - - hypothetical protein JCGZ_15100 [Jatropha curcas]
8 Hb_004003_020 0.0836807024 - - unnamed protein product [Coffea canephora]
9 Hb_062773_010 0.094377804 - - beta glucosidase [Manihot esculenta]
10 Hb_104014_010 0.1007350905 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
11 Hb_006620_030 0.101742093 - - nitrate reductase, putative [Ricinus communis]
12 Hb_089736_010 0.1055647581 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 7 [Populus euphratica]
13 Hb_003077_010 0.1068135933 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit O, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_000010_320 0.1096485482 - - PREDICTED: protein STICHEL-like 2 [Jatropha curcas]
15 Hb_000431_080 0.1107973478 - - PREDICTED: uncharacterized protein LOC105632547 [Jatropha curcas]
16 Hb_002499_050 0.1150085784 - - receptor protein kinase, putative [Ricinus communis]
17 Hb_000160_260 0.1158793787 - - nutrient reservoir, putative [Ricinus communis]
18 Hb_158845_010 0.1176616596 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Jatropha curcas]
19 Hb_105148_020 0.1182705066 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
20 Hb_000264_160 0.1190503802 - - PREDICTED: CBS domain-containing protein CBSX5-like [Jatropha curcas]

Gene co-expression network

sample Hb_002121_030 Hb_002121_030 Hb_001369_590 Hb_001369_590 Hb_002121_030--Hb_001369_590 Hb_000051_150 Hb_000051_150 Hb_002121_030--Hb_000051_150 Hb_000809_220 Hb_000809_220 Hb_002121_030--Hb_000809_220 Hb_000152_650 Hb_000152_650 Hb_002121_030--Hb_000152_650 Hb_054615_010 Hb_054615_010 Hb_002121_030--Hb_054615_010 Hb_005365_040 Hb_005365_040 Hb_002121_030--Hb_005365_040 Hb_001369_590--Hb_005365_040 Hb_002499_050 Hb_002499_050 Hb_001369_590--Hb_002499_050 Hb_006620_030 Hb_006620_030 Hb_001369_590--Hb_006620_030 Hb_001369_590--Hb_000152_650 Hb_000084_210 Hb_000084_210 Hb_001369_590--Hb_000084_210 Hb_000051_150--Hb_000809_220 Hb_000051_150--Hb_005365_040 Hb_104014_010 Hb_104014_010 Hb_000051_150--Hb_104014_010 Hb_010422_020 Hb_010422_020 Hb_000051_150--Hb_010422_020 Hb_000051_150--Hb_001369_590 Hb_004308_030 Hb_004308_030 Hb_000809_220--Hb_004308_030 Hb_001913_070 Hb_001913_070 Hb_000809_220--Hb_001913_070 Hb_001983_040 Hb_001983_040 Hb_000809_220--Hb_001983_040 Hb_000809_220--Hb_010422_020 Hb_000264_160 Hb_000264_160 Hb_000152_650--Hb_000264_160 Hb_000152_650--Hb_054615_010 Hb_000152_650--Hb_104014_010 Hb_000152_650--Hb_005365_040 Hb_089736_010 Hb_089736_010 Hb_054615_010--Hb_089736_010 Hb_004003_020 Hb_004003_020 Hb_054615_010--Hb_004003_020 Hb_074240_030 Hb_074240_030 Hb_054615_010--Hb_074240_030 Hb_088118_010 Hb_088118_010 Hb_054615_010--Hb_088118_010 Hb_000187_100 Hb_000187_100 Hb_005365_040--Hb_000187_100 Hb_000160_260 Hb_000160_260 Hb_005365_040--Hb_000160_260 Hb_005365_040--Hb_000084_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.320768 2.98211 53.9361 12.0855 0.119941 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.159035 12.0466

CAGE analysis