Hb_002121_050

Information

Type -
Description -
Location Contig2121: 111405-112535
Sequence    

Annotation

kegg
ID osa:4334818
description Os03g0853600
nr
ID KCW78425.1
description hypothetical protein EUGRSUZ_D02586 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059CKK9
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02586 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21998: 99048-112594
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002121_050 0.0 - - hypothetical protein EUGRSUZ_D02586 [Eucalyptus grandis]
2 Hb_000497_050 0.0499444525 - - PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Jatropha curcas]
3 Hb_006132_080 0.0534257025 - - PREDICTED: cytochrome P450 86A8-like [Jatropha curcas]
4 Hb_002752_020 0.0546077582 - - FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]
5 Hb_156093_010 0.0629065064 - - hypothetical protein RCOM_0504250 [Ricinus communis]
6 Hb_008225_050 0.0643212376 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]
7 Hb_007537_040 0.0644631127 - - PREDICTED: uncharacterized protein LOC105803495 [Gossypium raimondii]
8 Hb_011724_040 0.0645069554 - - PREDICTED: uncharacterized protein LOC105632860 [Jatropha curcas]
9 Hb_002534_020 0.0661089306 - - PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Gossypium raimondii]
10 Hb_000369_110 0.0670531444 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_033187_010 0.0698911761 - - epoxide hydrolase, putative [Ricinus communis]
12 Hb_008195_070 0.0699699616 - - PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_001999_230 0.0704598517 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
14 Hb_001975_100 0.0715974429 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
15 Hb_001735_040 0.0717253898 - - PREDICTED: F-box protein SKIP2-like isoform X2 [Populus euphratica]
16 Hb_146255_030 0.0719497483 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5-like [Jatropha curcas]
17 Hb_004032_400 0.0721256021 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
18 Hb_001277_350 0.07439908 - - early light-induced protein, putative [Ricinus communis]
19 Hb_003632_020 0.0746312162 - - calcium-binding family protein [Populus trichocarpa]
20 Hb_000254_130 0.0751445798 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002121_050 Hb_002121_050 Hb_000497_050 Hb_000497_050 Hb_002121_050--Hb_000497_050 Hb_006132_080 Hb_006132_080 Hb_002121_050--Hb_006132_080 Hb_002752_020 Hb_002752_020 Hb_002121_050--Hb_002752_020 Hb_156093_010 Hb_156093_010 Hb_002121_050--Hb_156093_010 Hb_008225_050 Hb_008225_050 Hb_002121_050--Hb_008225_050 Hb_007537_040 Hb_007537_040 Hb_002121_050--Hb_007537_040 Hb_000497_050--Hb_002752_020 Hb_001277_350 Hb_001277_350 Hb_000497_050--Hb_001277_350 Hb_004338_050 Hb_004338_050 Hb_000497_050--Hb_004338_050 Hb_001307_050 Hb_001307_050 Hb_000497_050--Hb_001307_050 Hb_146255_030 Hb_146255_030 Hb_000497_050--Hb_146255_030 Hb_003186_030 Hb_003186_030 Hb_006132_080--Hb_003186_030 Hb_004452_070 Hb_004452_070 Hb_006132_080--Hb_004452_070 Hb_000251_150 Hb_000251_150 Hb_006132_080--Hb_000251_150 Hb_000179_010 Hb_000179_010 Hb_006132_080--Hb_000179_010 Hb_011724_040 Hb_011724_040 Hb_006132_080--Hb_011724_040 Hb_002752_020--Hb_146255_030 Hb_004032_400 Hb_004032_400 Hb_002752_020--Hb_004032_400 Hb_002752_020--Hb_008225_050 Hb_002752_020--Hb_001277_350 Hb_002752_020--Hb_004338_050 Hb_156093_010--Hb_007537_040 Hb_000185_010 Hb_000185_010 Hb_156093_010--Hb_000185_010 Hb_003777_080 Hb_003777_080 Hb_156093_010--Hb_003777_080 Hb_000369_110 Hb_000369_110 Hb_156093_010--Hb_000369_110 Hb_004970_060 Hb_004970_060 Hb_156093_010--Hb_004970_060 Hb_008225_050--Hb_007537_040 Hb_000254_130 Hb_000254_130 Hb_008225_050--Hb_000254_130 Hb_003025_160 Hb_003025_160 Hb_008225_050--Hb_003025_160 Hb_008225_050--Hb_004970_060 Hb_001975_100 Hb_001975_100 Hb_008225_050--Hb_001975_100 Hb_007537_040--Hb_000369_110 Hb_007537_040--Hb_003025_160 Hb_007537_040--Hb_004970_060 Hb_001735_040 Hb_001735_040 Hb_007537_040--Hb_001735_040 Hb_007537_040--Hb_002752_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0314284 0.253755 6.91609 4.08916 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.184703 12.2752

CAGE analysis