Hb_002122_010

Information

Type -
Description -
Location Contig2122: 12844-13857
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21999: 13236-13645 , PASA_asmbl_22000: 13240-13932
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002122_010 0.0 - - -
2 Hb_002611_020 0.1070380862 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [Populus euphratica]
3 Hb_000230_180 0.10930716 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
4 Hb_075764_010 0.1207609911 - - PREDICTED: PRA1 family protein A1-like [Jatropha curcas]
5 Hb_001191_110 0.1231061782 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
6 Hb_000696_010 0.1235527247 - - RING-H2 finger protein ATL4M, putative [Ricinus communis]
7 Hb_010003_010 0.1304594545 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]
8 Hb_010655_020 0.1361319547 - - hypothetical protein CICLE_v10032410mg [Citrus clementina]
9 Hb_051257_010 0.1379935002 - - -
10 Hb_006541_040 0.1460203699 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
11 Hb_000371_090 0.1483147997 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like [Jatropha curcas]
12 Hb_004064_040 0.1493010902 - - PREDICTED: Down syndrome critical region protein 3 homolog isoform X3 [Jatropha curcas]
13 Hb_088163_010 0.1493020266 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
14 Hb_000184_070 0.1497629017 - - PREDICTED: uncharacterized protein LOC105641537 isoform X1 [Jatropha curcas]
15 Hb_000107_080 0.14994543 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
16 Hb_004040_030 0.1513644778 - - PREDICTED: probable inactive purple acid phosphatase 28 isoform X2 [Jatropha curcas]
17 Hb_000103_310 0.1519751158 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
18 Hb_002400_330 0.1521984071 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
19 Hb_006810_030 0.1527950225 - - Uncharacterized protein isoform 1 [Theobroma cacao]
20 Hb_086639_080 0.1531007529 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002122_010 Hb_002122_010 Hb_002611_020 Hb_002611_020 Hb_002122_010--Hb_002611_020 Hb_000230_180 Hb_000230_180 Hb_002122_010--Hb_000230_180 Hb_075764_010 Hb_075764_010 Hb_002122_010--Hb_075764_010 Hb_001191_110 Hb_001191_110 Hb_002122_010--Hb_001191_110 Hb_000696_010 Hb_000696_010 Hb_002122_010--Hb_000696_010 Hb_010003_010 Hb_010003_010 Hb_002122_010--Hb_010003_010 Hb_002611_020--Hb_000230_180 Hb_181328_010 Hb_181328_010 Hb_002611_020--Hb_181328_010 Hb_002400_330 Hb_002400_330 Hb_002611_020--Hb_002400_330 Hb_005170_010 Hb_005170_010 Hb_002611_020--Hb_005170_010 Hb_002611_020--Hb_000696_010 Hb_000230_180--Hb_005170_010 Hb_000230_180--Hb_075764_010 Hb_086639_080 Hb_086639_080 Hb_000230_180--Hb_086639_080 Hb_002498_050 Hb_002498_050 Hb_000230_180--Hb_002498_050 Hb_000230_180--Hb_000696_010 Hb_088163_010 Hb_088163_010 Hb_075764_010--Hb_088163_010 Hb_099878_050 Hb_099878_050 Hb_075764_010--Hb_099878_050 Hb_075764_010--Hb_002611_020 Hb_165402_010 Hb_165402_010 Hb_075764_010--Hb_165402_010 Hb_001191_110--Hb_000696_010 Hb_003671_010 Hb_003671_010 Hb_001191_110--Hb_003671_010 Hb_002375_040 Hb_002375_040 Hb_001191_110--Hb_002375_040 Hb_000107_080 Hb_000107_080 Hb_001191_110--Hb_000107_080 Hb_000146_040 Hb_000146_040 Hb_001191_110--Hb_000146_040 Hb_000594_050 Hb_000594_050 Hb_001191_110--Hb_000594_050 Hb_000696_010--Hb_003671_010 Hb_000696_010--Hb_000146_040 Hb_000696_010--Hb_002375_040 Hb_005797_010 Hb_005797_010 Hb_000696_010--Hb_005797_010 Hb_033286_010 Hb_033286_010 Hb_000696_010--Hb_033286_010 Hb_000889_100 Hb_000889_100 Hb_010003_010--Hb_000889_100 Hb_000094_290 Hb_000094_290 Hb_010003_010--Hb_000094_290 Hb_000077_290 Hb_000077_290 Hb_010003_010--Hb_000077_290 Hb_010003_010--Hb_000230_180 Hb_051257_010 Hb_051257_010 Hb_010003_010--Hb_051257_010 Hb_010003_010--Hb_005170_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.10042 2.01958 7.11694 14.606 5.20843 10.4107
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.37304 3.27409 2.72189 6.92437 3.63113

CAGE analysis