Hb_002122_040

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig2122: 38442-39422
Sequence    

Annotation

kegg
ID rcu:RCOM_1292200
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID XP_012066789.1
description PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID A0A067LDA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00277 PE=4 SV=1
Gene Ontology
ID GO:0016787
description disease resistance protein rga3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002122_040 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
2 Hb_009642_010 0.0846565034 - - Disease resistance protein RFL1, putative [Ricinus communis]
3 Hb_001105_200 0.0938064541 - - catalytic, putative [Ricinus communis]
4 Hb_012807_140 0.0999117897 transcription factor TF Family: MYB hypothetical protein POPTR_0009s01270g [Populus trichocarpa]
5 Hb_004712_020 0.102787978 - - hypothetical protein JCGZ_00782 [Jatropha curcas]
6 Hb_008692_020 0.1101875123 - - -
7 Hb_002870_010 0.1233445006 - - PREDICTED: uncharacterized protein LOC105649339 [Jatropha curcas]
8 Hb_010926_030 0.1242385364 - - hypothetical protein CISIN_1g037967mg, partial [Citrus sinensis]
9 Hb_001136_030 0.124908009 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25-like [Jatropha curcas]
10 Hb_000844_100 0.1256282585 - - hypothetical protein JCGZ_04351 [Jatropha curcas]
11 Hb_009510_060 0.1285171814 - - -
12 Hb_001158_080 0.1285858555 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
13 Hb_000740_130 0.1298129099 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
14 Hb_001377_010 0.132832305 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
15 Hb_001104_210 0.134574485 - - hypothetical protein JCGZ_23620 [Jatropha curcas]
16 Hb_088916_010 0.1347316068 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
17 Hb_004881_060 0.1350793255 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
18 Hb_003090_180 0.1393617911 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
19 Hb_182021_010 0.140043195 - - sucrose transporter 4 [Hevea brasiliensis]
20 Hb_002490_090 0.1415266404 - - PREDICTED: uncharacterized protein LOC105133003 [Populus euphratica]

Gene co-expression network

sample Hb_002122_040 Hb_002122_040 Hb_009642_010 Hb_009642_010 Hb_002122_040--Hb_009642_010 Hb_001105_200 Hb_001105_200 Hb_002122_040--Hb_001105_200 Hb_012807_140 Hb_012807_140 Hb_002122_040--Hb_012807_140 Hb_004712_020 Hb_004712_020 Hb_002122_040--Hb_004712_020 Hb_008692_020 Hb_008692_020 Hb_002122_040--Hb_008692_020 Hb_002870_010 Hb_002870_010 Hb_002122_040--Hb_002870_010 Hb_009642_010--Hb_001105_200 Hb_001158_080 Hb_001158_080 Hb_009642_010--Hb_001158_080 Hb_009642_010--Hb_004712_020 Hb_009642_010--Hb_012807_140 Hb_088916_010 Hb_088916_010 Hb_009642_010--Hb_088916_010 Hb_001105_200--Hb_004712_020 Hb_001105_200--Hb_012807_140 Hb_000205_210 Hb_000205_210 Hb_001105_200--Hb_000205_210 Hb_004881_060 Hb_004881_060 Hb_001105_200--Hb_004881_060 Hb_012807_140--Hb_004712_020 Hb_012807_140--Hb_002870_010 Hb_000487_240 Hb_000487_240 Hb_012807_140--Hb_000487_240 Hb_010926_030 Hb_010926_030 Hb_004712_020--Hb_010926_030 Hb_004712_020--Hb_008692_020 Hb_004712_020--Hb_002870_010 Hb_010761_030 Hb_010761_030 Hb_008692_020--Hb_010761_030 Hb_031931_030 Hb_031931_030 Hb_008692_020--Hb_031931_030 Hb_008692_020--Hb_002870_010 Hb_008692_020--Hb_001105_200 Hb_001377_010 Hb_001377_010 Hb_002870_010--Hb_001377_010 Hb_001514_070 Hb_001514_070 Hb_002870_010--Hb_001514_070 Hb_001136_030 Hb_001136_030 Hb_002870_010--Hb_001136_030 Hb_001104_210 Hb_001104_210 Hb_002870_010--Hb_001104_210 Hb_003090_180 Hb_003090_180 Hb_002870_010--Hb_003090_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0736469 7.20754 0.691648 6.35461 0.178846 0.336034
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 23.0102 5.0037

CAGE analysis