Hb_002122_060

Information

Type -
Description -
Location Contig2122: 40842-43532
Sequence    

Annotation

kegg
ID bvg:104883927
description putative disease resistance protein RGA4
nr
ID XP_010666805.1
description PREDICTED: putative disease resistance protein RGA4 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22004: 42188-43346 , PASA_asmbl_22005: 43495-44481
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002122_060 0.0 - - PREDICTED: putative disease resistance protein RGA4 [Beta vulgaris subsp. vulgaris]
2 Hb_000616_100 0.1299344875 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
3 Hb_000313_280 0.1421166145 - - hypothetical protein PRUPE_ppa014856mg, partial [Prunus persica]
4 Hb_000015_140 0.1507357215 - - PREDICTED: CASP-like protein 4C1 [Vitis vinifera]
5 Hb_002894_070 0.1735830922 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein B [Jatropha curcas]
6 Hb_008536_030 0.1762477494 - - hypothetical protein POPTR_0005s08290g [Populus trichocarpa]
7 Hb_002054_090 0.1821623996 - - PREDICTED: 36.4 kDa proline-rich protein-like [Gossypium raimondii]
8 Hb_003582_010 0.1838217467 - - hypothetical protein EUGRSUZ_B026451, partial [Eucalyptus grandis]
9 Hb_000320_030 0.1871479446 - - PREDICTED: aspartic proteinase-like [Jatropha curcas]
10 Hb_001115_010 0.1894197492 - - PREDICTED: 4-coumarate--CoA ligase 2-like [Jatropha curcas]
11 Hb_000270_550 0.1900163737 - - -
12 Hb_002936_020 0.1922802952 - - hypothetical protein VITISV_001748 [Vitis vinifera]
13 Hb_000720_060 0.1930270899 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
14 Hb_016120_020 0.1934597576 - - PREDICTED: tetrahydrocannabinolic acid synthase-like [Jatropha curcas]
15 Hb_110854_010 0.1939245034 - - -
16 Hb_001329_020 0.1942863441 - - PREDICTED: probable boron transporter 2 [Populus euphratica]
17 Hb_066207_020 0.1988052385 - - hypothetical protein JCGZ_22048 [Jatropha curcas]
18 Hb_002511_050 0.2002418366 - - ATP binding protein, putative [Ricinus communis]
19 Hb_000174_020 0.2024238083 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
20 Hb_001322_010 0.2025718459 - - PREDICTED: uncharacterized protein LOC105632322 [Jatropha curcas]

Gene co-expression network

sample Hb_002122_060 Hb_002122_060 Hb_000616_100 Hb_000616_100 Hb_002122_060--Hb_000616_100 Hb_000313_280 Hb_000313_280 Hb_002122_060--Hb_000313_280 Hb_000015_140 Hb_000015_140 Hb_002122_060--Hb_000015_140 Hb_002894_070 Hb_002894_070 Hb_002122_060--Hb_002894_070 Hb_008536_030 Hb_008536_030 Hb_002122_060--Hb_008536_030 Hb_002054_090 Hb_002054_090 Hb_002122_060--Hb_002054_090 Hb_000149_020 Hb_000149_020 Hb_000616_100--Hb_000149_020 Hb_000616_100--Hb_002894_070 Hb_000373_260 Hb_000373_260 Hb_000616_100--Hb_000373_260 Hb_000740_080 Hb_000740_080 Hb_000616_100--Hb_000740_080 Hb_003582_010 Hb_003582_010 Hb_000616_100--Hb_003582_010 Hb_000313_280--Hb_002894_070 Hb_000313_280--Hb_000015_140 Hb_000313_280--Hb_000616_100 Hb_000450_170 Hb_000450_170 Hb_000313_280--Hb_000450_170 Hb_003226_130 Hb_003226_130 Hb_000313_280--Hb_003226_130 Hb_066207_020 Hb_066207_020 Hb_000015_140--Hb_066207_020 Hb_000015_140--Hb_000740_080 Hb_002768_040 Hb_002768_040 Hb_000015_140--Hb_002768_040 Hb_000897_010 Hb_000897_010 Hb_000015_140--Hb_000897_010 Hb_019299_020 Hb_019299_020 Hb_000015_140--Hb_019299_020 Hb_002894_070--Hb_000740_080 Hb_002894_070--Hb_019299_020 Hb_000563_140 Hb_000563_140 Hb_002894_070--Hb_000563_140 Hb_020831_060 Hb_020831_060 Hb_002894_070--Hb_020831_060 Hb_008536_030--Hb_003582_010 Hb_000959_150 Hb_000959_150 Hb_008536_030--Hb_000959_150 Hb_059226_020 Hb_059226_020 Hb_008536_030--Hb_059226_020 Hb_022597_010 Hb_022597_010 Hb_008536_030--Hb_022597_010 Hb_080068_010 Hb_080068_010 Hb_008536_030--Hb_080068_010 Hb_008536_030--Hb_002054_090 Hb_004631_030 Hb_004631_030 Hb_002054_090--Hb_004631_030 Hb_041063_010 Hb_041063_010 Hb_002054_090--Hb_041063_010 Hb_000297_220 Hb_000297_220 Hb_002054_090--Hb_000297_220 Hb_060236_010 Hb_060236_010 Hb_002054_090--Hb_060236_010 Hb_004241_050 Hb_004241_050 Hb_002054_090--Hb_004241_050 Hb_000059_110 Hb_000059_110 Hb_002054_090--Hb_000059_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.263585 2.48012 1.02715 11.9234 0.0755663 0.0200134
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.387546 0.270968 0 2.64835 0.0698974

CAGE analysis