Hb_002122_080

Information

Type -
Description -
Location Contig2122: 51758-62737
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22007: 52903-55040 , PASA_asmbl_22008: 52903-53568 , PASA_asmbl_22009: 55097-55980 , PASA_asmbl_22011: 57258-57867
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002122_080 0.0 - - -
2 Hb_003506_020 0.1047032984 - - PREDICTED: uncharacterized protein LOC105125881 isoform X1 [Populus euphratica]
3 Hb_007576_200 0.113575959 - - amino acid transporter, putative [Ricinus communis]
4 Hb_000371_060 0.1148470964 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
5 Hb_000302_200 0.1178798981 - - ornithine cyclodeaminase, putative [Ricinus communis]
6 Hb_000059_130 0.1213554884 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
7 Hb_000216_020 0.1305119644 - - PREDICTED: benzaldehyde dehydrogenase (NAD(+))-like [Jatropha curcas]
8 Hb_001414_040 0.1345308832 - - PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha curcas]
9 Hb_002151_100 0.135492798 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
10 Hb_000792_040 0.1365608895 - - PREDICTED: steroid 5-alpha-reductase DET2 [Jatropha curcas]
11 Hb_000676_040 0.137157609 - - hypothetical protein POPTR_0007s13320g [Populus trichocarpa]
12 Hb_003894_100 0.1380545881 - - PREDICTED: AT-hook motif nuclear-localized protein 1-like [Jatropha curcas]
13 Hb_002447_150 0.1404588984 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
14 Hb_001799_190 0.1438402232 - - PREDICTED: uncharacterized protein LOC105643221 [Jatropha curcas]
15 Hb_009646_010 0.1445730915 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
16 Hb_000705_180 0.1459639233 - - hypothetical protein JCGZ_02923 [Jatropha curcas]
17 Hb_001818_060 0.1466285154 - - PREDICTED: cysteine proteinase inhibitor 5-like [Jatropha curcas]
18 Hb_000069_780 0.148191061 - - atpob1, putative [Ricinus communis]
19 Hb_003599_030 0.149399255 - - PREDICTED: glucan endo-1,3-beta-glucosidase 4 isoform X3 [Jatropha curcas]
20 Hb_002524_020 0.1496372687 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002122_080 Hb_002122_080 Hb_003506_020 Hb_003506_020 Hb_002122_080--Hb_003506_020 Hb_007576_200 Hb_007576_200 Hb_002122_080--Hb_007576_200 Hb_000371_060 Hb_000371_060 Hb_002122_080--Hb_000371_060 Hb_000302_200 Hb_000302_200 Hb_002122_080--Hb_000302_200 Hb_000059_130 Hb_000059_130 Hb_002122_080--Hb_000059_130 Hb_000216_020 Hb_000216_020 Hb_002122_080--Hb_000216_020 Hb_000000_120 Hb_000000_120 Hb_003506_020--Hb_000000_120 Hb_003506_020--Hb_000216_020 Hb_005970_010 Hb_005970_010 Hb_003506_020--Hb_005970_010 Hb_002151_100 Hb_002151_100 Hb_003506_020--Hb_002151_100 Hb_028077_020 Hb_028077_020 Hb_003506_020--Hb_028077_020 Hb_003747_210 Hb_003747_210 Hb_007576_200--Hb_003747_210 Hb_007576_200--Hb_000371_060 Hb_000676_040 Hb_000676_040 Hb_007576_200--Hb_000676_040 Hb_000656_150 Hb_000656_150 Hb_007576_200--Hb_000656_150 Hb_007576_200--Hb_000302_200 Hb_001414_040 Hb_001414_040 Hb_000371_060--Hb_001414_040 Hb_002524_020 Hb_002524_020 Hb_000371_060--Hb_002524_020 Hb_001259_120 Hb_001259_120 Hb_000371_060--Hb_001259_120 Hb_001195_350 Hb_001195_350 Hb_000371_060--Hb_001195_350 Hb_001257_100 Hb_001257_100 Hb_000371_060--Hb_001257_100 Hb_000371_060--Hb_000059_130 Hb_000792_040 Hb_000792_040 Hb_000302_200--Hb_000792_040 Hb_004994_090 Hb_004994_090 Hb_000302_200--Hb_004994_090 Hb_006501_160 Hb_006501_160 Hb_000302_200--Hb_006501_160 Hb_001031_090 Hb_001031_090 Hb_000302_200--Hb_001031_090 Hb_005215_020 Hb_005215_020 Hb_000302_200--Hb_005215_020 Hb_002995_040 Hb_002995_040 Hb_000302_200--Hb_002995_040 Hb_000059_130--Hb_000216_020 Hb_008667_060 Hb_008667_060 Hb_000059_130--Hb_008667_060 Hb_000473_150 Hb_000473_150 Hb_000059_130--Hb_000473_150 Hb_000805_190 Hb_000805_190 Hb_000059_130--Hb_000805_190 Hb_000069_780 Hb_000069_780 Hb_000059_130--Hb_000069_780 Hb_000216_020--Hb_000371_060 Hb_000270_230 Hb_000270_230 Hb_000216_020--Hb_000270_230 Hb_000216_020--Hb_008667_060 Hb_000216_020--Hb_000069_780
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.2256 5.36813 1.16853 3.78935 1.17741 0.518894
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.27893 0.644913 0.618238 3.92287 1.90191

CAGE analysis