Hb_002124_020

Information

Type transcription factor
Description TF Family: bHLH
Location Contig2124: 20070-21482
Sequence    

Annotation

kegg
ID rcu:RCOM_1313580
description DNA binding protein, putative (EC:1.3.1.74)
nr
ID AEG74013.1
description lMYC3 [Hevea brasiliensis]
swissprot
ID O49687
description Transcription factor MYC4 OS=Arabidopsis thaliana GN=MYC4 PE=1 SV=1
trembl
ID I3NR01
description LMYC3 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0032440
description transcription factor myc2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22014: 20162-21799
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002124_020 0.0 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
2 Hb_002234_220 0.1482750559 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 [Jatropha curcas]
3 Hb_000200_060 0.1909377774 - - palmitoyl-acyl carrier thioesterase [Medicago truncatula]
4 Hb_001741_100 0.1923635933 rubber biosynthesis Gene Name: REF6 unnamed protein product [Vitis vinifera]
5 Hb_000879_050 0.215265285 - - PREDICTED: uncharacterized protein LOC105107600 [Populus euphratica]
6 Hb_000605_010 0.2179968548 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
7 Hb_000258_020 0.2203053208 - - PREDICTED: RING-H2 finger protein ATL74 [Jatropha curcas]
8 Hb_002217_130 0.2271186867 - - galactinol synthase-1 [Manihot esculenta]
9 Hb_004007_150 0.2438134574 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 4 [Jatropha curcas]
10 Hb_000252_090 0.2457034781 - - PREDICTED: L-tryptophan--pyruvate aminotransferase 1 [Jatropha curcas]
11 Hb_000329_420 0.2510667293 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
12 Hb_120662_010 0.2561991056 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
13 Hb_000559_050 0.260428523 - - hypothetical protein JCGZ_20429 [Jatropha curcas]
14 Hb_000905_070 0.2625521381 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
15 Hb_054436_010 0.2641674756 - - PREDICTED: uncharacterized protein LOC105638666 [Jatropha curcas]
16 Hb_001935_190 0.2646412801 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
17 Hb_073212_010 0.269778177 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
18 Hb_152587_010 0.2710433947 - - -
19 Hb_002265_030 0.2727093834 - - PREDICTED: LOW QUALITY PROTEIN: probable calcium-binding protein CML49-like [Glycine max]
20 Hb_001138_010 0.2735282534 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_002124_020 Hb_002124_020 Hb_002234_220 Hb_002234_220 Hb_002124_020--Hb_002234_220 Hb_000200_060 Hb_000200_060 Hb_002124_020--Hb_000200_060 Hb_001741_100 Hb_001741_100 Hb_002124_020--Hb_001741_100 Hb_000879_050 Hb_000879_050 Hb_002124_020--Hb_000879_050 Hb_000605_010 Hb_000605_010 Hb_002124_020--Hb_000605_010 Hb_000258_020 Hb_000258_020 Hb_002124_020--Hb_000258_020 Hb_002234_220--Hb_001741_100 Hb_002217_130 Hb_002217_130 Hb_002234_220--Hb_002217_130 Hb_002234_220--Hb_000605_010 Hb_002234_220--Hb_000200_060 Hb_073212_010 Hb_073212_010 Hb_002234_220--Hb_073212_010 Hb_000200_060--Hb_001741_100 Hb_134732_010 Hb_134732_010 Hb_000200_060--Hb_134732_010 Hb_000200_060--Hb_002217_130 Hb_000007_310 Hb_000007_310 Hb_000200_060--Hb_000007_310 Hb_001741_100--Hb_002217_130 Hb_001892_160 Hb_001892_160 Hb_001741_100--Hb_001892_160 Hb_156144_020 Hb_156144_020 Hb_001741_100--Hb_156144_020 Hb_001741_100--Hb_000007_310 Hb_000879_050--Hb_000605_010 Hb_004007_150 Hb_004007_150 Hb_000879_050--Hb_004007_150 Hb_001677_050 Hb_001677_050 Hb_000879_050--Hb_001677_050 Hb_001632_010 Hb_001632_010 Hb_000879_050--Hb_001632_010 Hb_003534_040 Hb_003534_040 Hb_000879_050--Hb_003534_040 Hb_001138_010 Hb_001138_010 Hb_000605_010--Hb_001138_010 Hb_000605_010--Hb_073212_010 Hb_000605_010--Hb_001677_050 Hb_088542_010 Hb_088542_010 Hb_000605_010--Hb_088542_010 Hb_001916_120 Hb_001916_120 Hb_000258_020--Hb_001916_120 Hb_000927_040 Hb_000927_040 Hb_000258_020--Hb_000927_040 Hb_000258_020--Hb_002234_220 Hb_001277_410 Hb_001277_410 Hb_000258_020--Hb_001277_410 Hb_000258_020--Hb_001138_010 Hb_000028_640 Hb_000028_640 Hb_000258_020--Hb_000028_640
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.1623 2.41074 2.34775 11.6675 45.1696 20.4137
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0493432 0 3.02126

CAGE analysis