Hb_002126_020

Information

Type -
Description -
Location Contig2126: 23681-29799
Sequence    

Annotation

kegg
ID -
description -
nr
ID AES90304.2
description ferrochelatase [Medicago truncatula]
swissprot
ID -
description -
trembl
ID G7JPM9
description Ferrochelatase OS=Medicago truncatula GN=MTR_4g087690 PE=4 SV=2
Gene Ontology
ID GO:0009507
description ferrochelatase- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22023: 15421-26958 , PASA_asmbl_22024: 30201-30434
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002126_020 0.0 - - ferrochelatase [Medicago truncatula]
2 Hb_060458_010 0.1890963735 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003025_060 0.195433408 - - PREDICTED: protein TOO MANY MOUTHS [Jatropha curcas]
4 Hb_106873_020 0.2257892474 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
5 Hb_005723_070 0.231761113 - - hypothetical protein CISIN_1g011514mg [Citrus sinensis]
6 Hb_000876_010 0.2340349881 - - Uncharacterized protein TCM_022272 [Theobroma cacao]
7 Hb_000193_030 0.2347854975 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
8 Hb_103093_010 0.23665313 - - PREDICTED: wall-associated receptor kinase 4-like [Elaeis guineensis]
9 Hb_094132_010 0.2387790685 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]
10 Hb_000340_330 0.2464522972 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6 [Jatropha curcas]
11 Hb_000589_230 0.2476731256 - - unknown [Picea sitchensis]
12 Hb_008096_020 0.248623284 - - -
13 Hb_002972_060 0.256106129 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
14 Hb_000084_130 0.2575775322 - - -
15 Hb_001278_080 0.2606529244 transcription factor TF Family: AUX/IAA hypothetical protein JCGZ_09311 [Jatropha curcas]
16 Hb_002450_130 0.2608057948 - - hypothetical protein JCGZ_06565 [Jatropha curcas]
17 Hb_046120_010 0.2630550597 - - -
18 Hb_000053_050 0.2630562162 - - hypothetical protein F775_01878 [Aegilops tauschii]
19 Hb_002368_090 0.2637915264 - - PREDICTED: cationic peroxidase 1-like [Populus euphratica]
20 Hb_000082_020 0.2647467154 - - -

Gene co-expression network

sample Hb_002126_020 Hb_002126_020 Hb_060458_010 Hb_060458_010 Hb_002126_020--Hb_060458_010 Hb_003025_060 Hb_003025_060 Hb_002126_020--Hb_003025_060 Hb_106873_020 Hb_106873_020 Hb_002126_020--Hb_106873_020 Hb_005723_070 Hb_005723_070 Hb_002126_020--Hb_005723_070 Hb_000876_010 Hb_000876_010 Hb_002126_020--Hb_000876_010 Hb_000193_030 Hb_000193_030 Hb_002126_020--Hb_000193_030 Hb_141296_010 Hb_141296_010 Hb_060458_010--Hb_141296_010 Hb_006422_030 Hb_006422_030 Hb_060458_010--Hb_006422_030 Hb_000082_020 Hb_000082_020 Hb_060458_010--Hb_000082_020 Hb_005318_020 Hb_005318_020 Hb_060458_010--Hb_005318_020 Hb_114079_010 Hb_114079_010 Hb_060458_010--Hb_114079_010 Hb_003025_060--Hb_000876_010 Hb_003025_060--Hb_106873_020 Hb_000589_230 Hb_000589_230 Hb_003025_060--Hb_000589_230 Hb_003025_060--Hb_005723_070 Hb_060054_010 Hb_060054_010 Hb_003025_060--Hb_060054_010 Hb_106873_020--Hb_000589_230 Hb_106873_020--Hb_060054_010 Hb_148658_010 Hb_148658_010 Hb_106873_020--Hb_148658_010 Hb_081815_010 Hb_081815_010 Hb_106873_020--Hb_081815_010 Hb_106873_020--Hb_005723_070 Hb_000130_170 Hb_000130_170 Hb_005723_070--Hb_000130_170 Hb_005723_070--Hb_000876_010 Hb_002972_060 Hb_002972_060 Hb_005723_070--Hb_002972_060 Hb_002450_130 Hb_002450_130 Hb_005723_070--Hb_002450_130 Hb_033312_110 Hb_033312_110 Hb_005723_070--Hb_033312_110 Hb_000300_140 Hb_000300_140 Hb_005723_070--Hb_000300_140 Hb_000876_010--Hb_002450_130 Hb_000876_010--Hb_002972_060 Hb_000876_010--Hb_000130_170 Hb_009119_010 Hb_009119_010 Hb_000876_010--Hb_009119_010 Hb_094132_010 Hb_094132_010 Hb_000193_030--Hb_094132_010 Hb_103093_010 Hb_103093_010 Hb_000193_030--Hb_103093_010 Hb_163132_010 Hb_163132_010 Hb_000193_030--Hb_163132_010 Hb_007356_010 Hb_007356_010 Hb_000193_030--Hb_007356_010 Hb_007290_020 Hb_007290_020 Hb_000193_030--Hb_007290_020 Hb_068804_060 Hb_068804_060 Hb_000193_030--Hb_068804_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.721816 1.01432 11.6941 1.40557 16.4944
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.711993 0.930168

CAGE analysis