Hb_002131_020

Information

Type transcription factor
Description TF Family: IWS1
Location Contig2131: 44268-49494
Sequence    

Annotation

kegg
ID pop:POPTR_0003s09640g
description POPTRDRAFT_415152; hypothetical protein
nr
ID XP_012085950.1
description PREDICTED: protein IWS1 homolog [Jatropha curcas]
swissprot
ID Q96ST2
description Protein IWS1 homolog OS=Homo sapiens GN=IWS1 PE=1 SV=2
trembl
ID A0A067L9I5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17453 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein iws1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22065: 44297-49521
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002131_020 0.0 transcription factor TF Family: IWS1 PREDICTED: protein IWS1 homolog [Jatropha curcas]
2 Hb_001680_010 0.0568594565 - - Serine/threonine protein kinase SAPK3 [Medicago truncatula]
3 Hb_005993_020 0.0631272739 - - PREDICTED: uncharacterized protein LOC105649970 [Jatropha curcas]
4 Hb_000983_150 0.0686405186 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
5 Hb_002835_370 0.0707969419 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
6 Hb_010931_120 0.0731862399 - - myosin heavy chain-related family protein [Populus trichocarpa]
7 Hb_009627_010 0.0767446644 - - Protein dom-3, putative [Ricinus communis]
8 Hb_000071_030 0.0777372905 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Jatropha curcas]
9 Hb_000244_250 0.0784737491 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
10 Hb_000630_050 0.0810054425 - - conserved hypothetical protein [Ricinus communis]
11 Hb_030116_020 0.0814959431 - - hypothetical protein POPTR_0016s13630g [Populus trichocarpa]
12 Hb_006831_110 0.0815357995 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
13 Hb_001143_160 0.0831334033 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X2 [Jatropha curcas]
14 Hb_000283_070 0.084112285 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
15 Hb_000107_500 0.0847756665 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
16 Hb_003362_040 0.0848175802 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
17 Hb_004225_020 0.0849922629 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_123352_020 0.085296447 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
19 Hb_002078_020 0.0861812921 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
20 Hb_000206_250 0.0877529446 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]

Gene co-expression network

sample Hb_002131_020 Hb_002131_020 Hb_001680_010 Hb_001680_010 Hb_002131_020--Hb_001680_010 Hb_005993_020 Hb_005993_020 Hb_002131_020--Hb_005993_020 Hb_000983_150 Hb_000983_150 Hb_002131_020--Hb_000983_150 Hb_002835_370 Hb_002835_370 Hb_002131_020--Hb_002835_370 Hb_010931_120 Hb_010931_120 Hb_002131_020--Hb_010931_120 Hb_009627_010 Hb_009627_010 Hb_002131_020--Hb_009627_010 Hb_001680_010--Hb_005993_020 Hb_005532_050 Hb_005532_050 Hb_001680_010--Hb_005532_050 Hb_001301_200 Hb_001301_200 Hb_001680_010--Hb_001301_200 Hb_001680_010--Hb_002835_370 Hb_001541_020 Hb_001541_020 Hb_001680_010--Hb_001541_020 Hb_005993_020--Hb_001301_200 Hb_011671_430 Hb_011671_430 Hb_005993_020--Hb_011671_430 Hb_005993_020--Hb_005532_050 Hb_000630_050 Hb_000630_050 Hb_005993_020--Hb_000630_050 Hb_007904_160 Hb_007904_160 Hb_000983_150--Hb_007904_160 Hb_000367_010 Hb_000367_010 Hb_000983_150--Hb_000367_010 Hb_100215_010 Hb_100215_010 Hb_000983_150--Hb_100215_010 Hb_023480_010 Hb_023480_010 Hb_000983_150--Hb_023480_010 Hb_000008_290 Hb_000008_290 Hb_000983_150--Hb_000008_290 Hb_004221_020 Hb_004221_020 Hb_002835_370--Hb_004221_020 Hb_002025_020 Hb_002025_020 Hb_002835_370--Hb_002025_020 Hb_000072_220 Hb_000072_220 Hb_002835_370--Hb_000072_220 Hb_009548_020 Hb_009548_020 Hb_002835_370--Hb_009548_020 Hb_028089_010 Hb_028089_010 Hb_002835_370--Hb_028089_010 Hb_004055_030 Hb_004055_030 Hb_010931_120--Hb_004055_030 Hb_010931_120--Hb_011671_430 Hb_000445_420 Hb_000445_420 Hb_010931_120--Hb_000445_420 Hb_010931_120--Hb_005993_020 Hb_000260_220 Hb_000260_220 Hb_010931_120--Hb_000260_220 Hb_000160_040 Hb_000160_040 Hb_009627_010--Hb_000160_040 Hb_000618_030 Hb_000618_030 Hb_009627_010--Hb_000618_030 Hb_001172_010 Hb_001172_010 Hb_009627_010--Hb_001172_010 Hb_010381_060 Hb_010381_060 Hb_009627_010--Hb_010381_060 Hb_002304_090 Hb_002304_090 Hb_009627_010--Hb_002304_090 Hb_033834_060 Hb_033834_060 Hb_009627_010--Hb_033834_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
154.891 80.5995 45.731 63.5508 118.848 127.892
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
103.471 56.0469 113.337 97.3723 60.1971

CAGE analysis